{
 "cells": [
  {
   "cell_type": "code",
   "execution_count": null,
   "metadata": {},
   "outputs": [],
   "source": [
    "#order blast by sseqid start\n",
    "import pandas as pd\n",
    "blast_file = 'extras/data/tracker/blast_90_90.csv'\n",
    "blast_file_orderer = 'extras/data/tracker/blast_90_90.order.csv'\n",
    "df_blast = pd.read_csv(blast_file, index_col=False, sep='\\t')\n",
    "df_blast.columns = ['qseqid','sseqid','pident','length','mismatch','gapopen','qstart','qend','sstart','send','evalue','bitscore']\n",
    "df_blast = df_blast.sort_values(['sseqid', 'sstart'])\n",
    "df_blast.to_csv(blast_file_orderer, sep=\"\\t\", index=None)\n",
    "df_blast.head()\n"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 5,
   "metadata": {},
   "outputs": [
    {
     "data": {
      "text/html": [
       "<div>\n",
       "<style scoped>\n",
       "    .dataframe tbody tr th:only-of-type {\n",
       "        vertical-align: middle;\n",
       "    }\n",
       "\n",
       "    .dataframe tbody tr th {\n",
       "        vertical-align: top;\n",
       "    }\n",
       "\n",
       "    .dataframe thead th {\n",
       "        text-align: right;\n",
       "    }\n",
       "</style>\n",
       "<table border=\"1\" class=\"dataframe\">\n",
       "  <thead>\n",
       "    <tr style=\"text-align: right;\">\n",
       "      <th></th>\n",
       "      <th>qseqid</th>\n",
       "      <th>sseqid</th>\n",
       "      <th>pident</th>\n",
       "      <th>length</th>\n",
       "      <th>mismatch</th>\n",
       "      <th>gapopen</th>\n",
       "      <th>qstart</th>\n",
       "      <th>qend</th>\n",
       "      <th>sstart</th>\n",
       "      <th>send</th>\n",
       "      <th>evalue</th>\n",
       "      <th>bitscore</th>\n",
       "    </tr>\n",
       "  </thead>\n",
       "  <tbody>\n",
       "    <tr>\n",
       "      <th>820</th>\n",
       "      <td>MITE_T_11550|chr4B|491446578|491446917|ATTC|34...</td>\n",
       "      <td>chr1A</td>\n",
       "      <td>95.17</td>\n",
       "      <td>331</td>\n",
       "      <td>16</td>\n",
       "      <td>0</td>\n",
       "      <td>7</td>\n",
       "      <td>337</td>\n",
       "      <td>442471</td>\n",
       "      <td>442801</td>\n",
       "      <td>8.000000e-148</td>\n",
       "      <td>526.0</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>2934</th>\n",
       "      <td>MITE_T_45970|chr3B|651188527|651188767|AT|42|F...</td>\n",
       "      <td>chr1A</td>\n",
       "      <td>97.08</td>\n",
       "      <td>240</td>\n",
       "      <td>6</td>\n",
       "      <td>1</td>\n",
       "      <td>1</td>\n",
       "      <td>240</td>\n",
       "      <td>674129</td>\n",
       "      <td>674367</td>\n",
       "      <td>2.000000e-109</td>\n",
       "      <td>398.0</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>2963</th>\n",
       "      <td>MITE_T_45970|chr3B|651188527|651188767|AT|42|F...</td>\n",
       "      <td>chr1A</td>\n",
       "      <td>96.67</td>\n",
       "      <td>240</td>\n",
       "      <td>7</td>\n",
       "      <td>1</td>\n",
       "      <td>1</td>\n",
       "      <td>240</td>\n",
       "      <td>676678</td>\n",
       "      <td>676916</td>\n",
       "      <td>2.000000e-108</td>\n",
       "      <td>394.0</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>2988</th>\n",
       "      <td>MITE_T_45970|chr3B|651188527|651188767|AT|42|F...</td>\n",
       "      <td>chr1A</td>\n",
       "      <td>96.25</td>\n",
       "      <td>240</td>\n",
       "      <td>8</td>\n",
       "      <td>1</td>\n",
       "      <td>1</td>\n",
       "      <td>240</td>\n",
       "      <td>679227</td>\n",
       "      <td>679465</td>\n",
       "      <td>1.000000e-106</td>\n",
       "      <td>389.0</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>14809</th>\n",
       "      <td>MITE_T_100638|chr4A|274958954|274959060|ACT|25...</td>\n",
       "      <td>chr1A</td>\n",
       "      <td>95.28</td>\n",
       "      <td>106</td>\n",
       "      <td>5</td>\n",
       "      <td>0</td>\n",
       "      <td>1</td>\n",
       "      <td>106</td>\n",
       "      <td>712631</td>\n",
       "      <td>712526</td>\n",
       "      <td>6.000000e-41</td>\n",
       "      <td>168.0</td>\n",
       "    </tr>\n",
       "  </tbody>\n",
       "</table>\n",
       "</div>"
      ],
      "text/plain": [
       "                                                  qseqid sseqid  pident  \\\n",
       "820    MITE_T_11550|chr4B|491446578|491446917|ATTC|34...  chr1A   95.17   \n",
       "2934   MITE_T_45970|chr3B|651188527|651188767|AT|42|F...  chr1A   97.08   \n",
       "2963   MITE_T_45970|chr3B|651188527|651188767|AT|42|F...  chr1A   96.67   \n",
       "2988   MITE_T_45970|chr3B|651188527|651188767|AT|42|F...  chr1A   96.25   \n",
       "14809  MITE_T_100638|chr4A|274958954|274959060|ACT|25...  chr1A   95.28   \n",
       "\n",
       "       length  mismatch  gapopen  qstart  qend  sstart    send         evalue  \\\n",
       "820       331        16        0       7   337  442471  442801  8.000000e-148   \n",
       "2934      240         6        1       1   240  674129  674367  2.000000e-109   \n",
       "2963      240         7        1       1   240  676678  676916  2.000000e-108   \n",
       "2988      240         8        1       1   240  679227  679465  1.000000e-106   \n",
       "14809     106         5        0       1   106  712631  712526   6.000000e-41   \n",
       "\n",
       "       bitscore  \n",
       "820       526.0  \n",
       "2934      398.0  \n",
       "2963      394.0  \n",
       "2988      389.0  \n",
       "14809     168.0  "
      ]
     },
     "execution_count": 5,
     "metadata": {},
     "output_type": "execute_result"
    }
   ],
   "source": [
    "#order blast by sseqid start\n",
    "import pandas as pd\n",
    "blast_file = 'extras/data/iwgsc_cn4/blast_95.csv'\n",
    "blast_file_orderer = 'extras/data/iwgsc_cn4/blast_95_95.order.csv'\n",
    "df_blast = pd.read_csv(blast_file, index_col=False, sep='\\t')\n",
    "df_blast.columns = ['qseqid','sseqid','pident','length','mismatch','gapopen','qstart','qend','sstart','send','evalue','bitscore']\n",
    "df_blast = df_blast.sort_values(['sseqid', 'sstart'])\n",
    "df_blast.to_csv(blast_file_orderer, sep=\"\\t\", index=None)\n",
    "df_blast.head()"
   ]
  },
  {
   "cell_type": "markdown",
   "metadata": {},
   "source": [
    "Most common MITEs in wheat / TREP"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 1,
   "metadata": {},
   "outputs": [],
   "source": [
    "#"
   ]
  },
  {
   "cell_type": "markdown",
   "metadata": {},
   "source": [
    "Distance from MITEs to genes"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": null,
   "metadata": {},
   "outputs": [],
   "source": [
    "gene_file = '../data/iwgsc_refseqv1.0_HighConf_2017Mar13.gff3'\n",
    "blat_file = 'extras/data/iwgsc_cn4/blat_95_95_new.csv'\n",
    "blast_file = 'extras/data/iwgsc_cn4/blast_95.csv'\n",
    "genome_file = 'extras/data/iwgsc.gff3'\n",
    "\n",
    "#for rice data\n",
    "#genome_file = 'extras/data/rice.gff3.csv'\n",
    "#blat_file = 'extras/data/tracker/blat_90_90.csv'\n",
    "#gene_file = '../data/IRGSP-1.0_representative/locus.gff'"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 3,
   "metadata": {},
   "outputs": [],
   "source": [
    "#load MITEs\n",
    "import pandas as pd\n",
    "import sys\n",
    "df_blat = pd.read_csv(blat_file, index_col=False, sep='\\t')\n",
    "df_blat = df_blat[df_blat.tName != 'chrUn'].reset_index(drop=True)"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 5,
   "metadata": {},
   "outputs": [],
   "source": [
    "#load MITEs in blast\n",
    "import pandas as pd\n",
    "import sys\n",
    "df_blat = pd.read_csv(blast_file, index_col=False, sep='\\t')\n",
    "df_blat.columns = ['qseqid','sseqid','pident','length','mismatch','gapopen','qstart','qend','sstart','send','evalue','bitscore']\n",
    "df_blat = df_blat[df_blat.sseqid != 'chrUn'].reset_index(drop=True)"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": null,
   "metadata": {},
   "outputs": [],
   "source": [
    "#load genes\n",
    "df_genes = pd.read_csv(gene_file, index_col=False, sep='\\t')\n",
    "df_genes.columns = ['seqname', 'source', 'feature', 'start', 'end', 'score', 'strand', 'frame', 'attribute']\n",
    "df_genes = df_genes[df_genes.feature == 'gene'].reset_index(drop=True)"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 8,
   "metadata": {},
   "outputs": [],
   "source": [
    "#load genome structure\n",
    "df_genome = pd.read_csv(genome_file, index_col=False, sep='\\t', header=None)\n",
    "df_genome.columns = ['seqname', 'source', 'feature', 'start', 'end', 'score', 'strand', 'frame', 'attribute']\n",
    "df_genes_genome = {}\n",
    "for k,chromosome in df_genome.iterrows():\n",
    "    df_genes_genome[chromosome.seqname] = df_genes[(df_genes.seqname == chromosome.seqname)].reset_index()"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 10,
   "metadata": {},
   "outputs": [
    {
     "name": "stdout",
     "output_type": "stream",
     "text": [
      "682396\n"
     ]
    }
   ],
   "source": [
    "#calculate distance to closest gene\n",
    "distances = []\n",
    "print(len(df_blat.index))\n",
    "for k,v in df_blat.iterrows():\n",
    "    midd = (v.sstart + v.send) / 2\n",
    "    df_curr = df_genes_genome[v.sseqid]\n",
    "    df_res = df_curr.loc[(df_curr.start - midd).abs().argsort()[:1]]\n",
    "    if len(df_res.index) > 0:\n",
    "        closest = (int(df_res.start) + int(df_res.end)) / 2\n",
    "        distance = abs(midd - closest)\n",
    "        distances.append(distance)\n",
    "    else:\n",
    "        print(v.qseqid, midd)\n",
    "        print(df_res)\n",
    "        print(df_curr)\n",
    "        print('error')"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 11,
   "metadata": {},
   "outputs": [
    {
     "name": "stdout",
     "output_type": "stream",
     "text": [
      "0.0\n",
      "3631676.5\n"
     ]
    }
   ],
   "source": [
    "#calculate distance max and min\n",
    "print(min(distances))\n",
    "print(max(distances))\n",
    "distances_kb = []\n",
    "for d in distances:\n",
    "    distances_kb.append(d/1000)"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 16,
   "metadata": {},
   "outputs": [],
   "source": [
    "#! pip3 install seaborn\n",
    "distances_kb_filtered = []\n",
    "for distance_kb in distances_kb:\n",
    "    if distance_kb <= 500:\n",
    "        distances_kb_filtered.append(distance_kb)"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 17,
   "metadata": {},
   "outputs": [
    {
     "data": {
      "image/png": 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\n",
      "text/plain": [
       "<matplotlib.figure.Figure at 0x1384f0358>"
      ]
     },
     "metadata": {},
     "output_type": "display_data"
    }
   ],
   "source": [
    "%matplotlib inline\n",
    "\n",
    "# PLOT\n",
    "# Import the libraries\n",
    "import matplotlib.pyplot as plt\n",
    "import seaborn as sns\n",
    "\n",
    "# seaborn histogram\n",
    "sns.distplot(distances_kb_filtered, hist=True, kde=False, \n",
    "             bins=80, color = 'blue',\n",
    "             hist_kws={'edgecolor':'black'},rug=False)\n",
    "# Add labels\n",
    "plt.title('MITE distance to closest gene in wheat genome')\n",
    "plt.xlabel('Distance to closest gene (kb)')\n",
    "plt.ylabel('Number of MITEs')\n",
    "plt.savefig('extras/histogram.png', dpi=800,bbox_inches='tight')\n",
    "\n",
    "\n"
   ]
  },
  {
   "cell_type": "markdown",
   "metadata": {},
   "source": [
    "Count Families"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 2,
   "metadata": {},
   "outputs": [],
   "source": [
    "#count families \n",
    "import pandas as pd\n",
    "import sys\n",
    "df_blat = pd.read_csv('extras/data/iwgsc_cn4/blast_90_90.order.csv', index_col=False, sep='\\t')\n",
    "df_blat.columns = ['qseqid','sseqid','pident','length','mismatch','gapopen','qstart','qend','sstart','send','evalue','bitscore']\n",
    "\n",
    "df_trep = pd.read_csv('extras/data/iwgsc_cn4/trep.csv', index_col=False, sep='\\t')\n",
    "df_trep.columns = ['qseqid','sseqid','pident','length','mismatch','gapopen','qstart','qend','sstart','send','evalue','bitscore']"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 3,
   "metadata": {},
   "outputs": [],
   "source": [
    "#order by count\n",
    "s = df_blat.qseqid.value_counts()"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": null,
   "metadata": {},
   "outputs": [],
   "source": []
  },
  {
   "cell_type": "code",
   "execution_count": 7,
   "metadata": {},
   "outputs": [
    {
     "name": "stdout",
     "output_type": "stream",
     "text": [
      "MITE_T_107873|chr6A|1090278|1090371|TA|94|F4870 9948\n",
      "MITE_T_61402|chr4D|238640163|238640349|TT|22|F2412 7818\n",
      "MITE_T_110571|chr2D|607678032|607678122|TA|96|F5026 7723\n",
      "MITE_T_109028|chr4A|536887987|536888079|AT|97|F4956 6467\n",
      "MITE_T_110551|chr4D|389092137|389092227|TA|95|F5025 5920\n",
      "MITE_T_105766|chr2D|53145720|53145816|TT|97|F4748 5720\n",
      "MITE_T_115150|chr5B|212481103|212481188|AG|85|F5237 5714\n",
      "MITE_T_113343|chr2B|179285004|179285091|GA|87|F5153 5623\n",
      "MITE_T_106360|chr7D|382748178|382748273|TAA|92|F4793 5579\n",
      "MITE_T_127300|chr3A|443850571|443851119|TA|13|F5947 5170\n",
      "MITE_T_104908|chr7B|439502556|439502653|GT|98|F4693 4875\n",
      "MITE_T_117911|chr3B|698612860|698612942|TA|86|F5390 4836\n",
      "MITE_T_107353|chr1D|415405053|415405147|TA|101|F4845 4558\n",
      "MITE_T_117900|chr6A|369574554|369574636|TA|86|F5389 4397\n",
      "MITE_T_116685|chr5D|244254210|244254293|ACT|88|F5319 4201\n",
      "MITE_T_118125|chr2A|762155266|762155348|TA|86|F5402 4060\n",
      "MITE_T_117895|chr1B|442205233|442205315|TA|87|F5388 3698\n",
      "MITE_T_80802|chr4D|492804265|492804407|TA|13|F3463 3672\n",
      "MITE_T_117820|chr4A|473505387|473505469|TA|86|F5380 3458\n",
      "MITE_T_106077|chr1B|12831702|12831797|AT|100|F4770 3368\n",
      "MITE_T_109120|chr3A|712686178|712686270|GG|93|F4959 3064\n",
      "MITE_T_105943|chr4D|124628764|124628859|TA|99|F4758 2906\n",
      "MITE_T_118237|chr7B|632939297|632939379|TA|86|F5410 2861\n",
      "MITE_T_110874|chr6B|135139472|135139561|TTT|89|F5049 2805\n",
      "MITE_T_122345|chr2A|567731901|567731968|TC|67|F5705 2800\n",
      "MITE_T_89283|chr6B|139746909|139747033|TA|129|F3835 2799\n",
      "MITE_T_88968|chr5A|114487739|114487863|TA|131|F3834 2796\n",
      "MITE_T_120111|chr7B|17215833|17215914|TA|85|F5476 2713\n",
      "MITE_T_108761|chr2D|511922599|511922692|TTAA|101|F4929 2706\n",
      "MITE_T_102873|chr4D|329882928|329883030|TATA|111|F4575 2641\n",
      "MITE_T_115988|chr4B|135038653|135038737|ACCT|84|F5279 2565\n",
      "MITE_T_116275|chr5B|584998446|584998530|AT|88|F5300 2522\n",
      "MITE_T_117630|chr1B|669231219|669231301|TA|88|F5369 2517\n",
      "MITE_T_106859|chr7D|545608366|545608461|GAA|95|F4813 2496\n",
      "MITE_T_61567|chr4D|457481040|457481226|AT|199|F2421 2384\n",
      "MITE_T_89570|chr4B|97071248|97071372|GC|33|F3849 2243\n",
      "MITE_T_91459|chr2A|102329258|102329379|TA|34|F3977 2123\n",
      "MITE_T_90877|chr2D|553819937|553820060|ACCCCGACA|124|F3933 2088\n",
      "MITE_T_100734|chr6D|125190595|125190700|GC|110|F4426 2050\n",
      "MITE_T_84289|chr6D|374645326|374645456|TG|135|F3626 2012\n",
      "MITE_T_100706|chr7B|124022415|124022520|GC|112|F4424 1973\n",
      "MITE_T_85386|chr2A|718971886|718972015|AAA|132|F3668 1962\n",
      "MITE_T_101174|chr2B|799224050|799224155|gc|110|F4455 1903\n",
      "MITE_T_80633|chr2A|74829051|74829194|TCT|147|F3451 1902\n",
      "MITE_T_104601|chr5B|571189362|571189460|AGCT|108|F4667 1717\n",
      "MITE_T_106421|chr5D|388097999|388098094|TA|99|F4798 1681\n",
      "MITE_T_61489|chr1D|74927234|74927420|AAG|22|F2417 1589\n",
      "MITE_T_103423|chr4A|681667325|681667425|CA|100|F4616 1486\n",
      "MITE_T_104444|chr1A|425721940|425722038|AT|103|F4659 1454\n",
      "MITE_T_51659|chr2B|578016536|578016769|TTG|23|F2031 1422\n",
      "MITE_T_59536|chr4A|229501584|229501779|GAATTC|10|F2307 1398\n",
      "MITE_T_50859|chr7D|208130809|208131045|TA|44|F1995 1394\n",
      "MITE_T_103392|chr7D|45835319|45835419|TC|101|F4614 1384\n",
      "MITE_T_49628|chr1B|688762482|688762721|AT|17|F1939 1378\n",
      "MITE_T_80492|chr2A|266202966|266203112|AT|152|F3434 1370\n",
      "MITE_T_80536|chr6D|312104065|312104210|AT|142|F3439 1356\n",
      "MITE_T_58585|chr7B|273308306|273308509|AGTACT|10|F2240 1329\n",
      "MITE_T_89547|chr5B|687221459|687221583|TAT|32|F3846 1313\n",
      "MITE_T_91402|chr1D|11489663|11489785|TA|129|F3970 1264\n",
      "MITE_T_39457|chr3B|356675065|356675326|TTTAT|271|F1648 1216\n",
      "MITE_T_91727|chr5D|233153533|233153653|AT|125|F3998 1200\n",
      "MITE_T_55193|chr1B|336784673|336784888|TA|223|F2182 1174\n",
      "MITE_T_101558|chr2A|729669688|729669792|GTAC|117|F4465 1170\n",
      "MITE_T_58212|chr2B|116243704|116243908|TGC|30|F2232 1150\n",
      "MITE_T_187|chr1D|487348601|487349081|AAAAAATTG|43|F18 1149\n",
      "MITE_T_55163|chr1A|553906898|553907113|TA|227|F2179 1130\n",
      "MITE_T_55081|chr2D|21826708|21826923|TA|227|F2172 1129\n",
      "MITE_T_61128|chr4A|93926617|93926805|TA|21|F2402 1108\n",
      "MITE_T_110625|chr7B|519912104|519912194|AA|91|F5030 1091\n",
      "MITE_T_55144|chr6B|478330567|478330782|TA|227|F2177 1066\n",
      "MITE_T_53450|chr4D|96715633|96715854|TA|99|F2101 1064\n",
      "MITE_T_109519|chr3D|398859182|398859273|TATAAG|91|F4981 1032\n",
      "MITE_T_61033|chr2D|627955954|627956142|CTCAGATC|24|F2393 1017\n",
      "MITE_T_80859|chr7B|675387833|675387975|AC|143|F3466 1014\n",
      "MITE_T_54927|chr5D|115924033|115924248|TA|226|F2165 1006\n",
      "MITE_T_60971|chr6B|408843451|408843639|GCTGGTGG|22|F2391 1003\n",
      "MITE_T_52366|chr4D|367049233|367049465|TA|235|F2040 1000\n",
      "MITE_T_124443|chr4A|171966645|171967295|CGCT|13|F5833 994\n",
      "MITE_T_31014|chr7B|532280399|532280676|GC|13|F1252 993\n",
      "MITE_T_60911|chr4A|125230587|125230775|ATTGCATG|22|F2386 990\n",
      "MITE_T_40476|chr1B|266379168|266379427|TA|40|F1695 990\n",
      "MITE_T_54353|chr4D|67339716|67339935|CT|230|F2130 982\n",
      "MITE_T_99320|chr6A|504471536|504471646|AT|115|F4329 978\n",
      "MITE_T_80438|chr7B|219565138|219565285|GA|148|F3430 967\n",
      "MITE_T_45100|chr1A|562726718|562726961|CTC|246|F1872 962\n",
      "MITE_T_55221|chr7D|592546245|592546460|TA|229|F2184 953\n",
      "MITE_T_59800|chr4B|263035167|263035359|TAGC|27|F2331 937\n",
      "MITE_T_55157|chr7D|41778895|41779110|TA|94|F2178 932\n",
      "MITE_T_106378|chr1B|356952484|356952579|TA|101|F4795 924\n",
      "MITE_T_42267|chr1A|398126372|398126624|AT|262|F1784 918\n",
      "MITE_T_52493|chr6A|117403091|117403322|AT|239|F2043 903\n",
      "MITE_T_50796|chr5A|673143868|673144105|TA|246|F1990 902\n",
      "MITE_T_104552|chr3D|112712667|112712765|AT|103|F4664 900\n",
      "MITE_T_50256|chr1A|360069436|360069674|TA|248|F1965 897\n",
      "MITE_T_60662|chr2B|295987183|295987372|TCATGA|30|F2374 893\n",
      "MITE_T_53488|chr5B|317893464|317893685|GAA|223|F2103 890\n",
      "MITE_T_54839|chr1D|70893210|70893426|AGT|95|F2160 888\n",
      "MITE_T_61915|chr6D|40427085|40427270|TA|199|F2440 882\n",
      "MITE_T_45214|chr3D|511728153|511728396|AA|250|F1880 880\n",
      "MITE_T_45469|chr6B|260549787|260550029|TATA|255|F1885 879\n",
      "MITE_T_45755|chr2A|82208810|82209051|CA|248|F1899 878\n",
      "MITE_T_60898|chr1B|406995179|406995367|CTCCCAAC|22|F2384 877\n",
      "MITE_T_49684|chr4A|565349082|565349321|AT|248|F1943 874\n",
      "MITE_T_43744|chr2A|602275458|602275702|GAG|248|F1861 870\n",
      "MITE_T_122496|chr4A|225339535|225339596|AT|65|F5732 870\n",
      "MITE_T_54468|chr6B|701525387|701525605|AG|222|F2138 868\n",
      "MITE_T_59653|chr1D|19733437|19733631|GT|25|F2317 865\n",
      "MITE_T_50811|chr5A|90626497|90626734|TA|244|F1992 861\n",
      "MITE_T_104456|chr1A|554368280|554368378|TC|99|F4660 860\n",
      "MITE_T_53471|chr4B|2266209|2266430|TT|227|F2102 860\n",
      "MITE_T_54548|chr6B|307574012|307574229|AAT|94|F2145 856\n",
      "MITE_T_45838|chr5A|641062104|641062345|AAG|246|F1907 853\n",
      "MITE_T_45856|chr3A|670878327|670878568|GA|246|F1909 848\n",
      "MITE_T_53339|chr5A|536883826|536884049|ATA|230|F2094 847\n",
      "MITE_T_4262|chr7A|104653374|104653774|TATATATATA|57|F264 842\n",
      "MITE_T_43531|chr5A|243924329|243924573|AT|258|F1850 837\n",
      "MITE_T_105526|chr3A|638201844|638201940|AA|97|F4730 835\n",
      "MITE_T_27217|chr7B|727642806|727643095|AT|56|F1081 830\n",
      "MITE_T_52774|chr3A|207980081|207980309|TTT|238|F2060 826\n",
      "MITE_T_59878|chr3A|225197404|225197596|TGTG|24|F2333 823\n",
      "MITE_T_42813|chr2B|22017256|22017504|CTA|255|F1821 816\n",
      "MITE_T_60962|chr5B|393496086|393496274|CATAGGAT|25|F2390 813\n",
      "MITE_T_30701|chr4A|723631325|723631603|AA|47|F1230 810\n",
      "MITE_T_38222|chr7A|32987484|32987747|TAA|41|F1581 809\n",
      "MITE_T_40316|chr2B|441600671|441600930|TA|40|F1683 807\n",
      "MITE_T_43544|chr5A|297737354|297737598|TA|252|F1852 806\n",
      "MITE_T_109700|chr7A|364165323|364165414|AT|91|F4993 806\n",
      "MITE_T_36769|chr7D|152542784|152543049|TT|272|F1524 803\n",
      "MITE_T_7940|chr7B|482682794|482683161|TA|10|F453 786\n",
      "MITE_T_39821|chr4D|151979159|151979418|TA|40|F1670 778\n",
      "MITE_T_41973|chr3A|637696170|637696422|TA|262|F1782 777\n",
      "MITE_T_29329|chr7D|84571182|84571465|AA|51|F1178 768\n",
      "MITE_T_53957|chr7D|266554115|266554335|AT|93|F2116 757\n",
      "MITE_T_78588|chr3B|752167923|752168074|TA|45|F3377 754\n",
      "MITE_T_106289|chr2B|442518287|442518382|TTG|95|F4787 752\n",
      "MITE_T_78789|chr2B|465953641|465953792|TA|45|F3387 751\n",
      "MITE_T_79034|chr7B|632273990|632274141|TA|45|F3399 750\n",
      "MITE_T_78473|chr5B|125541179|125541330|TA|45|F3373 747\n",
      "MITE_T_43767|chr7A|703525304|703525548|AT|252|F1862 745\n",
      "MITE_T_43118|chr2B|241774876|241775122|GTACGTAC|28|F1838 743\n",
      "MITE_T_45802|chr3A|401713411|401713652|TC|246|F1904 741\n",
      "MITE_T_78878|chr5B|338048578|338048729|TA|45|F3392 740\n",
      "MITE_T_78558|chr4B|138237038|138237189|TA|45|F3376 737\n",
      "MITE_T_79016|chr7B|526058388|526058539|TA|40|F3398 736\n",
      "MITE_T_78933|chr3B|319731229|319731380|TA|45|F3394 736\n",
      "MITE_T_55115|chr5A|35033934|35034149|TA|227|F2174 736\n",
      "MITE_T_54348|chr3D|113268572|113268791|TCA|55|F2129 736\n",
      "MITE_T_36101|chr6D|181960827|181961094|AAAATA|41|F1490 736\n",
      "MITE_T_59893|chr1A|234201312|234201504|GCGC|30|F2334 735\n"
     ]
    },
    {
     "name": "stdout",
     "output_type": "stream",
     "text": [
      "MITE_T_78633|chr1B|664317008|664317159|TA|45|F3378 734\n",
      "MITE_T_60173|chr7B|568480088|568480278|CTCCAC|26|F2364 729\n",
      "MITE_T_78851|chr4B|27523609|27523760|TA|40|F3391 728\n",
      "MITE_T_55100|chr5A|401306692|401306907|TA|221|F2173 726\n",
      "MITE_T_35813|chr6B|500895919|500896187|AT|46|F1479 726\n",
      "MITE_T_78759|chr6B|19238249|19238400|TA|45|F3386 725\n",
      "MITE_T_60125|chr2B|172996541|172996731|TTGCAA|30|F2358 724\n",
      "MITE_T_78450|chr7B|123749662|123749813|TA|44|F3372 723\n",
      "MITE_T_3404|chr5A|188888150|188888560|TA|63|F225 722\n",
      "MITE_T_49406|chr7A|151325171|151325410|TA|27|F1932 717\n",
      "MITE_T_78817|chr4B|23847377|23847528|TA|45|F3389 714\n",
      "MITE_T_78941|chr1D|465526846|465526997|TA|41|F3395 713\n",
      "MITE_T_78702|chr6A|15628952|15629103|TA|45|F3383 712\n",
      "MITE_T_53358|chr2B|679054799|679055022|AACATAC|225|F2095 711\n",
      "MITE_T_30787|chr1B|627876675|627876953|GC|50|F1233 708\n",
      "MITE_T_78697|chr3A|466154761|466154912|TA|43|F3382 707\n",
      "MITE_T_61104|chr3A|613365571|613365759|GTCAGATG|22|F2399 707\n",
      "MITE_T_77972|chr5B|622603714|622603869|CC|44|F3333 704\n",
      "MITE_T_55188|chr4B|595274842|595275057|TA|94|F2181 703\n",
      "MITE_T_77937|chr4B|531689881|531690036|CC|48|F3330 701\n",
      "MITE_T_45043|chr7A|148418499|148418742|AT|254|F1867 700\n",
      "MITE_T_53235|chr7A|302408686|302408909|TA|28|F2090 700\n",
      "MITE_T_53552|chr4A|572504560|572504781|TA|100|F2108 697\n",
      "MITE_T_78535|chr1D|434773376|434773527|TA|44|F3375 694\n",
      "MITE_T_77932|chr1B|663081117|663081272|CC|44|F3329 693\n",
      "MITE_T_55069|chr5A|368103141|368103356|TA|96|F2170 692\n",
      "MITE_T_43638|chr4A|418644509|418644753|TA|257|F1857 687\n",
      "MITE_T_58474|chr1D|377998855|377999058|AT|32|F2236 684\n",
      "MITE_T_45892|chr6A|97698808|97699049|AA|245|F1912 681\n",
      "MITE_T_77912|chr4B|405055686|405055841|GC|45|F3328 678\n",
      "MITE_T_78399|chr5B|547355606|547355758|TA|45|F3366 676\n",
      "MITE_T_59133|chr3A|206940921|206941119|AC|27|F2283 675\n",
      "MITE_T_50671|chr4D|7763632|7763869|TA|244|F1980 670\n",
      "MITE_T_8885|chr1A|134354378|134354736|AG|15|F500 669\n",
      "MITE_T_35216|chr7B|699405941|699406212|AT|47|F1447 669\n",
      "MITE_T_5662|chr2D|56325970|56326354|AAG|70|F341 668\n",
      "MITE_T_103348|chr2A|618975025|618975125|GC|105|F4610 667\n",
      "MITE_T_77353|chr5B|533091376|533091534|TA|48|F3289 664\n",
      "MITE_T_93281|chr4A|58220118|58220237|AT|10|F4041 660\n",
      "MITE_T_49808|chr6B|514657470|514657709|ACT|251|F1949 651\n",
      "MITE_T_2740|chr6D|227416528|227416949|TATATATATA|74|F183 647\n",
      "MITE_T_104885|chr2A|19379040|19379137|TA|103|F4690 645\n",
      "MITE_T_35946|chr2D|273949030|273949298|TATA|47|F1483 642\n",
      "MITE_T_21304|chr1A|350489589|350489897|TA|43|F863 639\n",
      "MITE_T_59840|chr1B|270395901|270396093|CTGA|17|F2332 637\n",
      "MITE_T_18058|chr6B|277270370|277270690|TG|47|F747 637\n",
      "MITE_T_78669|chr6D|139568294|139568445|TA|44|F3380 635\n",
      "MITE_T_42634|chr4A|542487390|542487640|TA|262|F1798 634\n",
      "MITE_T_7423|chr1A|452819744|452820116|GC|19|F418 632\n",
      "MITE_T_18690|chr2A|604748162|604748478|AT|29|F785 630\n",
      "MITE_T_17787|chr5A|366030490|366030812|ATT|23|F731 628\n",
      "MITE_T_22207|chr7A|729574151|729574456|TCA|40|F909 625\n",
      "MITE_T_21435|chr6A|426635493|426635800|TTA|15|F872 620\n",
      "MITE_T_23510|chr7A|80532808|80533107|GC|20|F972 618\n",
      "MITE_T_35329|chr3A|553434808|553435078|TT|44|F1454 617\n",
      "MITE_T_21889|chr5A|148832426|148832731|TTA|40|F896 616\n",
      "MITE_T_21843|chr2A|65769552|65769858|TG|21|F893 615\n",
      "MITE_T_8934|chr4B|360180285|360180643|CT|16|F502 615\n",
      "MITE_T_108967|chr2B|718972429|718972522|ATAA|93|F4948 614\n",
      "MITE_T_35021|chr2D|8271295|8271566|ATAA|42|F1437 612\n",
      "MITE_T_54809|chr1D|87836979|87837195|AT|227|F2158 606\n",
      "MITE_T_50205|chr6A|224899419|224899657|TA|252|F1960 606\n",
      "MITE_T_6004|chr7B|67121789|67122171|TTA|13|F358 605\n",
      "MITE_T_18229|chr3A|675874730|675875050|AT|24|F750 600\n",
      "MITE_T_28765|chr1B|504650625|504650908|TAC|14|F1163 600\n",
      "MITE_T_45747|chr3A|412936982|412937223|CTA|25|F1898 599\n",
      "MITE_T_87893|chr5B|10084249|10084374|AT|120|F3780 598\n",
      "MITE_T_91625|chr5D|94343109|94343230|GC|125|F3992 597\n",
      "MITE_T_55057|chr7A|24381706|24381921|TA|92|F2169 592\n",
      "MITE_T_39999|chr5B|348868779|348869038|TA|39|F1678 592\n",
      "MITE_T_22045|chr3A|509544307|509544612|TTA|15|F899 592\n",
      "MITE_T_7879|chr7B|606782011|606782379|TTAAGA|64|F447 592\n",
      "MITE_T_103382|chr1B|327340497|327340597|ATAT|109|F4613 586\n",
      "MITE_T_22168|chr5A|504903004|504903309|TAA|40|F904 580\n",
      "MITE_T_49400|chr6A|131442223|131442462|AT|28|F1931 574\n",
      "MITE_T_95806|chr2D|107204071|107204185|TA|120|F4198 570\n",
      "MITE_T_60802|chr3D|17422380|17422569|AATAAA|17|F2379 566\n",
      "MITE_T_18885|chr3A|24049231|24049546|AT|47|F794 566\n",
      "MITE_T_39838|chr2D|346100197|346100456|TA|38|F1672 566\n",
      "MITE_T_77839|chr1A|354935678|354935833|GC|41|F3325 563\n",
      "MITE_T_104800|chr4B|273251691|273251788|AAA|99|F4683 558\n",
      "MITE_T_115355|chr2A|52398008|52398093|AT|92|F5240 558\n",
      "MITE_T_78522|chr7A|110778336|110778487|TA|40|F3374 558\n",
      "MITE_T_58679|chr7D|450343925|450344127|CT|33|F2250 555\n",
      "MITE_T_20912|chr1A|558036437|558036746|TCA|15|F855 554\n",
      "MITE_T_42686|chr2D|473537186|473537436|AT|28|F1803 549\n",
      "MITE_T_102879|chr6B|437333951|437334053|TA|106|F4576 544\n",
      "MITE_T_18598|chr5B|547075901|547076218|TA|29|F777 542\n",
      "MITE_T_23561|chr7D|164300760|164301058|TA|32|F974 542\n",
      "MITE_T_39246|chr4A|318169715|318169976|AT|41|F1627 536\n",
      "MITE_T_11817|chr4A|595849069|595849406|TTA|28|F599 536\n",
      "MITE_T_54715|chr2D|387255014|387255231|AC|225|F2150 530\n",
      "MITE_T_109116|chr1B|339366355|339366447|AA|94|F4958 530\n",
      "MITE_T_24028|chr7A|265036822|265037120|AT|32|F978 529\n",
      "MITE_T_102864|chr5A|2816889|2816991|TGCA|113|F4574 523\n",
      "MITE_T_104314|chr5D|487170809|487170908|GC|103|F4646 519\n",
      "MITE_T_59629|chr7A|342268955|342269149|GC|28|F2314 507\n",
      "MITE_T_32243|chr6B|366745972|366746247|AA|46|F1288 504\n",
      "MITE_T_55073|chr5A|32129473|32129688|TA|94|F2171 497\n",
      "MITE_T_25334|chr2A|474954|475249|TCA|40|F1012 497\n",
      "MITE_T_25284|chr4B|453721019|453721315|TT|29|F1006 496\n",
      "MITE_T_60939|chr5A|30453706|30453894|GTTGGGAG|25|F2387 493\n",
      "MITE_T_4523|chr4D|341703865|341704264|AAGGAAATA|411|F269 493\n",
      "MITE_T_7703|chr2A|176181793|176182161|AATT|10|F440 493\n",
      "MITE_T_36403|chr4B|98826877|98827144|AT|47|F1504 486\n",
      "MITE_T_35998|chr2B|794772262|794772530|AT|42|F1485 485\n",
      "MITE_T_59985|chr3B|423054519|423054711|TGGG|24|F2343 484\n",
      "MITE_T_60946|chr5B|372564381|372564569|ATCGCAAG|22|F2388 480\n",
      "MITE_T_114654|chr2B|87743115|87743201|TAT|86|F5225 480\n",
      "MITE_T_26132|chr3A|443889058|443889351|TA|30|F1050 479\n",
      "MITE_T_27151|chr4A|685424117|685424408|TA|29|F1074 477\n",
      "MITE_T_59670|chr5D|470272472|470272666|AT|28|F2318 476\n",
      "MITE_T_50974|chr5B|641169063|641169299|GA|244|F2005 476\n",
      "MITE_T_18037|chr4D|161262197|161262517|ATGGAA|67|F746 476\n",
      "MITE_T_40302|chr1B|644442441|644442700|TA|40|F1681 472\n",
      "MITE_T_62487|chr5D|553883963|553884145|AGA|17|F2492 468\n",
      "MITE_T_22179|chr4D|491562593|491562898|CAA|14|F905 468\n",
      "MITE_T_40328|chr4B|455430531|455430790|TA|40|F1684 467\n",
      "MITE_T_37434|chr7B|616906474|616906739|TAT|41|F1543 467\n",
      "MITE_T_26389|chr6D|94757165|94757457|TT|304|F1064 467\n",
      "MITE_T_61141|chr5D|350380294|350380481|AT|23|F2404 465\n",
      "MITE_T_54880|chr6B|8687228|8687444|CATG|55|F2162 465\n",
      "MITE_T_77996|chr7A|130378208|130378362|GC|38|F3336 464\n",
      "MITE_T_22925|chr4B|472557286|472557586|TA|33|F949 460\n",
      "MITE_T_30839|chr5B|287883736|287884014|AATT|46|F1236 459\n",
      "MITE_T_24827|chr3D|412455199|412455496|AT|60|F994 458\n",
      "MITE_T_19148|chr1A|580454714|580455027|TA|18|F804 458\n",
      "MITE_T_62416|chr2D|32635591|32635773|TCA|18|F2482 456\n",
      "MITE_T_21495|chr2B|749848970|749849277|TTA|15|F874 455\n",
      "MITE_T_54897|chr5A|129611663|129611878|TA|223|F2163 454\n",
      "MITE_T_83254|chr6D|450559478|450559609|AT|136|F3606 453\n",
      "MITE_T_62999|chr2D|569842110|569842290|TAAG|16|F2520 453\n",
      "MITE_T_106409|chr2A|765547574|765547669|AT|101|F4796 452\n",
      "MITE_T_18674|chr4B|82002268|82002585|CA|40|F784 452\n",
      "MITE_T_35089|chr5B|466706334|466706605|TTAA|48|F1440 452\n",
      "MITE_T_21867|chr6D|115077841|115078146|TA|38|F895 452\n",
      "MITE_T_26147|chr3B|812604970|812605263|TA|26|F1051 451\n",
      "MITE_T_14371|chr6A|408052891|408053220|TA|35|F674 448\n",
      "MITE_T_20784|chr5A|440951405|440951715|TCGA|39|F848 447\n",
      "MITE_T_60180|chr6B|718474762|718474952|AA|200|F2365 447\n",
      "MITE_T_62556|chr2B|606053960|606054142|TTA|18|F2498 447\n",
      "MITE_T_39716|chr4A|597820072|597820332|TA|55|F1666 447\n",
      "MITE_T_58621|chr4D|118518420|118518622|ATT|28|F2245 445\n",
      "MITE_T_62432|chr5D|482895322|482895504|TAA|18|F2485 443\n",
      "MITE_T_73537|chr5A|660208222|660208385|TA|43|F3012 441\n",
      "MITE_T_61485|chr1A|521852598|521852784|ATATAT|60|F2416 440\n",
      "MITE_T_61364|chr7B|713235563|713235750|GTAT|20|F2410 440\n",
      "MITE_T_61018|chr6D|381548892|381549080|GC|22|F2392 439\n",
      "MITE_T_25665|chr3B|44638870|44639165|TAA|38|F1022 439\n",
      "MITE_T_111546|chr3B|660831032|660831121|TA|94|F5090 437\n",
      "MITE_T_54740|chr2B|128366278|128366494|TCGA|55|F2152 436\n",
      "MITE_T_61109|chr7B|727390803|727390991|GTC|21|F2400 435\n",
      "MITE_T_36043|chr2B|755403743|755404011|ATATAT|49|F1486 435\n",
      "MITE_T_62657|chr4D|468205352|468205533|TTA|18|F2511 435\n",
      "MITE_T_62459|chr6A|610981172|610981354|TTT|17|F2488 431\n",
      "MITE_T_91379|chr3B|578976256|578976378|TG|123|F3969 430\n",
      "MITE_T_9400|chr5D|326836553|326836904|CTTGGGCA|13|F535 429\n",
      "MITE_T_74302|chr2A|581965635|581965797|TA|43|F3046 429\n",
      "MITE_T_78208|chr1A|7949516|7949670|GC|38|F3346 429\n",
      "MITE_T_35272|chr4B|213995630|213995900|TTAA|48|F1451 426\n",
      "MITE_T_62526|chr5D|89377289|89377471|ATA|17|F2496 424\n",
      "MITE_T_99199|chr6A|100813397|100813508|AT|115|F4318 424\n"
     ]
    },
    {
     "name": "stdout",
     "output_type": "stream",
     "text": [
      "MITE_T_19828|chr6A|522224651|522224963|AT|34|F823 424\n",
      "MITE_T_23494|chr5A|549405165|549405464|TA|33|F970 422\n",
      "MITE_T_62409|chr5A|471707088|471707270|TCA|18|F2481 418\n",
      "MITE_T_14837|chr4B|600483433|600483762|CTAGTACTAG|21|F676 418\n",
      "MITE_T_78240|chr5A|490309722|490309876|GC|38|F3348 416\n",
      "MITE_T_22003|chr4A|590230223|590230528|TTA|15|F898 415\n",
      "MITE_T_59029|chr5A|604911858|604912057|TA|28|F2272 414\n",
      "MITE_T_73734|chr3A|9970160|9970322|TA|43|F3029 414\n",
      "MITE_T_127010|chr7A|631285940|631286500|AT|14|F5927 413\n",
      "MITE_T_2887|chr1A|201863364|201863784|AT|66|F192 412\n",
      "MITE_T_5399|chr5D|63034941|63035328|GC|13|F327 411\n",
      "MITE_T_56431|chr7B|200425390|200425599|GTC|35|F2205 410\n",
      "MITE_T_35170|chr2B|226608789|226609060|AT|48|F1444 407\n",
      "MITE_T_60157|chr2B|2836022|2836212|TGGTGG|23|F2362 407\n",
      "MITE_T_25308|chr4B|601535219|601535515|TTA|22|F1009 405\n",
      "MITE_T_53006|chr5D|446272064|446272290|TTAA|239|F2067 405\n",
      "MITE_T_87573|chr5A|69844778|69844905|AT|122|F3760 403\n",
      "MITE_T_127496|chr1A|377646296|377646841|TA|10|F5954 401\n",
      "MITE_T_78367|chr4D|30135279|30135432|GC|39|F3361 401\n",
      "MITE_T_50789|chr5D|538773474|538773711|CCG|15|F1989 400\n",
      "MITE_T_21692|chr6A|265995341|265995647|TATA|20|F885 397\n",
      "MITE_T_59967|chr5B|546410663|546410855|TCCT|27|F2341 396\n",
      "MITE_T_4215|chr2A|156772826|156773227|AAT|15|F262 396\n",
      "MITE_T_53600|chr6A|109177963|109178183|GA|227|F2110 392\n",
      "MITE_T_26607|chr2D|418363234|418363525|TTG|111|F1067 389\n",
      "MITE_T_111462|chr3B|421578061|421578150|TA|93|F5086 387\n",
      "MITE_T_5639|chr3A|638057676|638058061|CG|10|F339 385\n",
      "MITE_T_31645|chr2D|481281926|481282202|TCT|285|F1267 385\n",
      "MITE_T_66350|chr1D|326157572|326157743|TAC|17|F2693 380\n",
      "MITE_T_60905|chr2B|49139381|49139569|CTGGAGAA|22|F2385 376\n",
      "MITE_T_5991|chr3A|9037845|9038227|TTA|16|F356 376\n",
      "MITE_T_123058|chr2B|784283983|784284031|GC|18|F5766 375\n",
      "MITE_T_21476|chr2A|150181259|150181566|TTA|15|F873 375\n",
      "MITE_T_78088|chr1A|7664802|7664956|GC|37|F3340 374\n",
      "MITE_T_29935|chr3B|192110358|192110638|AT|53|F1202 369\n",
      "MITE_T_78195|chr3A|434834927|434835081|GC|36|F3345 369\n",
      "MITE_T_28716|chr5D|124043313|124043596|ATC|14|F1159 367\n",
      "MITE_T_60950|chr4A|249491657|249491845|CCCCACAT|22|F2389 367\n",
      "MITE_T_38051|chr6B|152385819|152386082|CT|276|F1573 362\n",
      "MITE_T_30931|chr7B|43499587|43499865|ATT|51|F1242 361\n",
      "MITE_T_78374|chr7A|542967863|542968016|GC|38|F3362 358\n",
      "MITE_T_77881|chr7A|30261683|30261838|GC|38|F3327 358\n",
      "MITE_T_19402|chr2B|723722206|723722518|GT|16|F817 356\n",
      "MITE_T_40460|chr5A|657479202|657479461|AC|265|F1694 356\n",
      "MITE_T_27071|chr1B|570480161|570480452|TA|11|F1073 355\n",
      "MITE_T_109553|chr3B|85078969|85079060|TA|97|F4984 354\n",
      "MITE_T_111421|chr5B|559684505|559684594|TA|16|F5083 354\n",
      "MITE_T_53719|chr1D|284638791|284639011|TT|230|F2115 353\n",
      "MITE_T_3997|chr7B|401366203|401366606|TTT|14|F254 353\n",
      "MITE_T_62592|chr5B|26643411|26643592|AT|23|F2504 351\n",
      "MITE_T_73493|chr5D|500853883|500854046|TA|43|F3006 351\n",
      "MITE_T_35695|chr5B|298215373|298215641|CA|53|F1472 348\n",
      "MITE_T_61294|chr6B|684602742|684602929|TA|19|F2408 347\n",
      "MITE_T_35435|chr5A|472376105|472376375|AT|47|F1458 346\n",
      "MITE_T_5435|chr5A|129277571|129277957|TTA|19|F328 346\n",
      "MITE_T_54257|chr5A|241292540|241292759|GT|224|F2122 342\n",
      "MITE_T_125720|chr6A|593932340|593932938|GTTTGCTA|13|F5879 341\n",
      "MITE_T_60807|chr1B|268545856|268546045|TA|20|F2380 341\n",
      "MITE_T_121141|chr3A|44635969|44636050|TA|85|F5563 341\n",
      "MITE_T_57895|chr3B|409906997|409907203|GA|18|F2222 338\n",
      "MITE_T_3969|chr4D|184609910|184610314|TA|23|F250 336\n",
      "MITE_T_39817|chr5A|135068493|135068752|TA|40|F1669 335\n",
      "MITE_T_78444|chr4D|100570886|100571037|TA|44|F3371 334\n",
      "MITE_T_56488|chr7A|680533926|680534134|TGA|20|F2211 333\n",
      "MITE_T_59037|chr1B|586455667|586455866|AAT|15|F2273 333\n",
      "MITE_T_52503|chr5D|129481346|129481577|TA|27|F2044 332\n",
      "MITE_T_32678|chr5B|19617495|19617769|AT|48|F1303 332\n",
      "MITE_T_78131|chr6A|273584262|273584416|GC|38|F3343 328\n",
      "MITE_T_18514|chr4D|1355787|1356105|TGAGGA|21|F773 326\n",
      "MITE_T_59962|chr3A|700416154|700416346|GT|37|F2340 326\n",
      "MITE_T_60743|chr4B|649583195|649583384|AT|20|F2378 326\n",
      "MITE_T_21699|chr2A|34479657|34479963|TTA|15|F886 324\n",
      "MITE_T_51537|chr3D|158288726|158288961|CG|30|F2021 324\n",
      "MITE_T_77803|chr4D|3747421|3747576|GC|38|F3322 322\n",
      "MITE_T_34825|chr4D|492279921|492280193|AG|14|F1427 322\n",
      "MITE_T_41328|chr2B|25265698|25265955|TA|271|F1746 319\n",
      "MITE_T_41324|chr3B|727476672|727476929|TA|268|F1745 318\n",
      "MITE_T_40405|chr6A|565316507|565316766|TA|40|F1689 314\n",
      "MITE_T_51801|chr4A|109425960|109426193|ACT|27|F2035 313\n",
      "MITE_T_24994|chr6B|366590084|366590380|TCA|39|F1002 313\n",
      "MITE_T_34975|chr7D|142421521|142421792|AT|62|F1434 312\n",
      "MITE_T_82863|chr2A|12616488|12616620|CT|47|F3587 312\n",
      "MITE_T_80496|chr1B|102142117|102142263|TT|148|F3435 310\n",
      "MITE_T_51603|chr2A|355453439|355453674|TGA|28|F2024 307\n",
      "MITE_T_4731|chr2A|337586147|337586542|AT|10|F287 306\n",
      "MITE_T_8675|chr3B|550973430|550973791|GCA|366|F485 305\n",
      "MITE_T_50697|chr1D|356928264|356928501|TA|30|F1983 304\n",
      "MITE_T_45879|chr5B|711718734|711718975|AA|30|F1911 304\n",
      "MITE_T_122284|chr7A|350571794|350571864|TA|74|F5694 304\n",
      "MITE_T_53138|chr4D|200876199|200876423|TA|240|F2083 303\n",
      "MITE_T_2321|chr2D|63006559|63006985|TC|30|F159 303\n",
      "MITE_T_51067|chr3A|669952830|669953065|TTTT|27|F2009 303\n",
      "MITE_T_40975|chr1B|212845707|212845964|TA|267|F1723 302\n",
      "MITE_T_94646|chr1A|410159160|410159276|AT|10|F4115 302\n",
      "MITE_T_39478|chr3B|30080476|30080736|TA|269|F1651 302\n",
      "MITE_T_55585|chr7B|195102343|195102554|TG|36|F2197 299\n",
      "MITE_T_18714|chr4D|113494003|113494319|AT|14|F786 298\n",
      "MITE_T_18163|chr1A|540335595|540335915|TTA|15|F748 291\n",
      "MITE_T_55678|chr4A|193391336|193391547|CG|37|F2200 290\n",
      "MITE_T_82730|chr1B|419879402|419879534|TA|140|F3580 290\n",
      "MITE_T_66199|chr7D|307433385|307433556|TAA|18|F2676 290\n",
      "MITE_T_125410|chr2B|737085297|737085906|AT|14|F5867 289\n",
      "MITE_T_20355|chr5A|640691751|640692062|AACT|18|F842 288\n",
      "MITE_T_16612|chr3B|11551809|11552135|ATAT|28|F704 286\n",
      "MITE_T_12178|chr2B|234829517|234829853|GT|57|F610 286\n",
      "MITE_T_22202|chr5A|688445787|688446092|TAA|20|F908 285\n",
      "MITE_T_17541|chr3B|369098094|369098418|AT|19|F721 283\n",
      "MITE_T_41378|chr7D|121780584|121780840|TA|269|F1749 281\n",
      "MITE_T_104635|chr5D|551403897|551403995|AT|103|F4671 278\n",
      "MITE_T_33828|chr3D|537045147|537045420|TA|48|F1366 274\n",
      "MITE_T_121102|chr6B|416097855|416097936|TA|86|F5557 273\n",
      "MITE_T_122290|chr2B|754965175|754965245|TA|74|F5695 273\n",
      "MITE_T_38920|chr3D|22639126|22639388|TTA|43|F1607 271\n",
      "MITE_T_28519|chr2A|623147781|623148065|TAA|48|F1141 270\n",
      "MITE_T_100583|chr2D|367218088|367218194|CA|108|F4417 267\n",
      "MITE_T_23973|chr3B|41426175|41426473|TAG|54|F977 267\n",
      "MITE_T_105269|chr5B|659301163|659301260|AT|101|F4715 264\n",
      "MITE_T_78255|chr7D|610780791|610780945|TA|43|F3350 261\n",
      "MITE_T_16018|chr5B|31903162|31903489|GCC|21|F689 255\n",
      "MITE_T_12003|chr2B|98312427|98312764|GC|25|F606 254\n",
      "MITE_T_54843|chr2A|217473|217689|TT|217|F2161 253\n",
      "MITE_T_43035|chr3A|743471359|743471605|TA|17|F1831 252\n",
      "MITE_T_28481|chr7D|118818287|118818571|TTA|48|F1137 251\n",
      "MITE_T_26121|chr5A|586591167|586591460|CAC|42|F1049 249\n",
      "MITE_T_28337|chr6D|274783287|274783572|TAA|42|F1124 249\n",
      "MITE_T_25353|chr4B|167583850|167584145|TA|49|F1013 248\n",
      "MITE_T_22848|chr1B|456748003|456748304|AT|24|F940 245\n",
      "MITE_T_28559|chr7B|194755145|194755429|TAA|43|F1142 244\n",
      "MITE_T_28511|chr2A|696309549|696309833|TAA|48|F1140 244\n",
      "MITE_T_58165|chr3A|466310970|466311175|GTAC|216|F2231 244\n",
      "MITE_T_27316|chr7B|84113671|84113960|AT|20|F1084 243\n",
      "MITE_T_37555|chr3B|785257498|785257762|ATT|40|F1551 243\n",
      "MITE_T_28589|chr2B|218147963|218148247|TAA|13|F1146 242\n",
      "MITE_T_11839|chr4B|453443687|453444024|TTA|43|F602 242\n",
      "MITE_T_45812|chr5A|568401370|568401611|ATG|249|F1905 239\n",
      "MITE_T_25291|chr5A|496612801|496613097|AGT|42|F1007 239\n",
      "MITE_T_6437|chr7B|56474704|56475083|CA|391|F377 236\n",
      "MITE_T_17869|chr3D|104126998|104127320|TAA|15|F736 235\n",
      "MITE_T_6998|chr6B|652762190|652762565|CA|383|F403 235\n",
      "MITE_T_82759|chr3B|61536195|61536327|TA|13|F3583 234\n",
      "MITE_T_28628|chr2A|65228956|65229240|TAA|22|F1150 233\n",
      "MITE_T_6271|chr6A|70919083|70919463|TG|392|F372 233\n",
      "MITE_T_54271|chr2B|728559571|728559790|TA|19|F2124 232\n",
      "MITE_T_22192|chr3A|119777696|119778001|AT|53|F906 231\n",
      "MITE_T_59996|chr2D|603126232|603126424|AC|37|F2345 231\n",
      "MITE_T_65585|chr2B|303376395|303377126|CATG|15|F2658 230\n",
      "MITE_T_22075|chr7D|34314281|34314586|TA|57|F901 227\n",
      "MITE_T_99188|chr6A|99403049|99403160|AT|13|F4317 227\n",
      "MITE_T_30900|chr6A|446889409|446889687|TT|280|F1240 227\n"
     ]
    },
    {
     "name": "stdout",
     "output_type": "stream",
     "text": [
      "MITE_T_75738|chr4A|714331464|714331625|TA|45|F3152 226\n",
      "MITE_T_127082|chr6B|639983490|639984045|GCTTTGATA|561|F5934 225\n",
      "MITE_T_59992|chr7A|663045085|663045277|GAGT|27|F2344 224\n",
      "MITE_T_60550|chr6B|179655896|179656085|TA|205|F2369 223\n",
      "MITE_T_60581|chr1A|316643309|316643498|GTTGTGCT|23|F2372 222\n",
      "MITE_T_22811|chr5D|182505059|182505360|TTA|15|F938 221\n",
      "MITE_T_18439|chr2B|731194495|731194813|TTA|15|F765 221\n",
      "MITE_T_27900|chr4A|618318910|618319659|GCGC|17|F1109 220\n",
      "MITE_T_86668|chr3D|433565985|433566112|TT|129|F3732 220\n",
      "MITE_T_122306|chr7B|143334811|143334880|AT|75|F5697 220\n",
      "MITE_T_58060|chr5B|626195146|626195352|GA|208|F2223 220\n",
      "MITE_T_122755|chr5A|200782960|200783017|AT|62|F5748 219\n",
      "MITE_T_37954|chr3B|795814938|795815202|AA|276|F1567 217\n",
      "MITE_T_39615|chr3A|146197975|146198235|TA|71|F1658 214\n",
      "MITE_T_122319|chr1A|28705660|28705729|ATAT|71|F5699 213\n",
      "MITE_T_88506|chr5B|440564451|440564576|TA|131|F3810 212\n",
      "MITE_T_54364|chr5B|285934526|285934744|TA|223|F2131 211\n",
      "MITE_T_28613|chr3A|612961398|612961682|TAA|21|F1148 210\n",
      "MITE_T_21894|chr7D|239628776|239629081|CA|27|F897 210\n",
      "MITE_T_30866|chr3B|66920689|66920967|AA|278|F1237 210\n",
      "MITE_T_25750|chr3D|228488319|228488613|CTA|12|F1033 206\n",
      "MITE_T_59594|chr5A|693314768|693314963|AAA|204|F2310 203\n",
      "MITE_T_82172|chr4B|9944335|9944469|GC|140|F3552 203\n",
      "MITE_T_34578|chr2A|456716756|456717028|TA|48|F1416 203\n",
      "MITE_T_104065|chr6D|29740989|29741088|AT|96|F4633 201\n",
      "MITE_T_11811|chr1A|156966251|156966588|TTA|40|F598 198\n",
      "MITE_T_28499|chr4D|3760371|3760655|TCA|16|F1138 197\n",
      "MITE_T_42558|chr1A|31180339|31180589|AT|35|F1796 197\n",
      "MITE_T_38457|chr7A|519203073|519203336|GC|53|F1590 197\n",
      "MITE_T_18829|chr6D|122931691|122932006|ATT|35|F790 195\n",
      "MITE_T_18928|chr4D|319170790|319171104|GC|41|F799 194\n",
      "MITE_T_124003|chr7B|677484002|677484661|AT|15|F5819 194\n",
      "MITE_T_53574|chr6B|71083889|71084110|TA|230|F2109 193\n",
      "MITE_T_11834|chr2A|613053032|613053369|TTA|40|F601 192\n",
      "MITE_T_91266|chr1A|114551450|114551572|TA|23|F3959 190\n",
      "MITE_T_110309|chr3B|747332973|747333063|TA|94|F5011 190\n",
      "MITE_T_77783|chr7A|473919799|473919955|GC|15|F3319 190\n",
      "MITE_T_60139|chr6D|299983261|299983451|CCGGGA|25|F2359 189\n",
      "MITE_T_5813|chr6B|570651286|570651668|AT|10|F354 188\n",
      "MITE_T_82285|chr1B|558228128|558228262|AT|24|F3562 188\n",
      "MITE_T_124915|chr5B|197752428|197753057|TTAA|15|F5847 187\n",
      "MITE_T_60035|chr7B|375188608|375188799|AT|57|F2349 187\n",
      "MITE_T_11830|chr5A|25089574|25089911|TAA|27|F600 186\n",
      "MITE_T_2970|chr5B|241679449|241679867|ATATAT|68|F196 184\n",
      "MITE_T_82262|chr7B|506726675|506726809|AT|25|F3559 184\n",
      "MITE_T_104708|chr4A|644660266|644660363|TT|98|F4679 184\n",
      "MITE_T_10847|chr2A|78550958|78551302|AT|11|F570 182\n",
      "MITE_T_3532|chr2B|205641692|205642101|TCG|14|F231 182\n",
      "MITE_T_65312|chr5A|702727787|702727960|AT|22|F2641 181\n",
      "MITE_T_33608|chr4D|325892174|325892447|AAT|24|F1353 181\n",
      "MITE_T_21794|chr3A|427766561|427766867|TA|24|F889 181\n",
      "MITE_T_50289|chr1D|68379939|68380177|TA|245|F1966 180\n",
      "MITE_T_77345|chr6A|46592910|46593068|TA|44|F3287 180\n",
      "MITE_T_35667|chr2B|480967293|480968039|GC|13|F1469 178\n",
      "MITE_T_4851|chr2D|11204193|11204586|GC|10|F292 177\n",
      "MITE_T_76809|chr7D|572755059|572755218|TA|41|F3238 176\n",
      "MITE_T_8001|chr5D|540222638|540223005|GTGCAC|69|F457 176\n",
      "MITE_T_52754|chr3B|823595238|823595466|GC|233|F2057 176\n",
      "MITE_T_28574|chr3A|502398298|502398582|TGA|21|F1143 176\n",
      "MITE_T_122376|chr3B|520447969|520448035|TA|71|F5709 175\n",
      "MITE_T_82196|chr4B|325710572|325710706|TG|145|F3556 174\n",
      "MITE_T_55035|chr5A|285786742|285786957|TA|230|F2168 174\n",
      "MITE_T_74902|chr2D|22200799|22200960|TA|41|F3089 173\n",
      "MITE_T_55347|chr5B|505836409|505836622|TG|217|F2192 172\n",
      "MITE_T_100436|chr2B|31741619|31741726|CG|111|F4405 172\n",
      "MITE_T_127245|chr5B|683614216|683614765|GA|17|F5945 171\n",
      "MITE_T_39408|chr5D|52951856|52952117|GTAC|272|F1642 171\n",
      "MITE_T_37811|chr1A|432191216|432191480|TG|270|F1561 171\n",
      "MITE_T_50165|chr4D|4202724|4202962|TA|249|F1959 171\n",
      "MITE_T_6864|chr6B|18237231|18237606|ATT|50|F399 170\n",
      "MITE_T_123048|chr2B|441604133|441604181|GC|22|F5764 170\n",
      "MITE_T_77979|chr5A|106001873|106002028|GC|36|F3334 170\n",
      "MITE_T_59559|chr4B|56077129|56077324|GC|20|F2309 169\n",
      "MITE_T_45195|chr5D|482869180|482869423|TA|249|F1878 169\n",
      "MITE_T_82295|chr2B|602191838|602192560|CG|17|F3563 167\n",
      "MITE_T_24869|chr7B|117799066|117799362|AT|11|F998 167\n",
      "MITE_T_30528|chr7A|560442811|560443090|AC|11|F1221 166\n",
      "MITE_T_25725|chr7A|487624520|487624814|TA|23|F1030 166\n",
      "MITE_T_90984|chr1B|457470079|457470202|TG|126|F3937 166\n",
      "MITE_T_122457|chr6A|530114437|530114499|CA|63|F5725 165\n",
      "MITE_T_33508|chr7B|2503961|2504234|CA|287|F1343 164\n",
      "MITE_T_127803|chr7B|616662632|616663428|TA|13|F5982 163\n",
      "MITE_T_125858|chr4D|364641556|364642150|GC|621|F5883 160\n",
      "MITE_T_124374|chr6B|202116389|202117039|CTGCTCCC|14|F5832 160\n",
      "MITE_T_26081|chr5D|406129721|406130014|TCTATAAA|311|F1046 160\n",
      "MITE_T_100816|chr3A|739385250|739385355|TG|105|F4431 159\n",
      "MITE_T_36558|chr5B|175850743|175851009|AC|21|F1512 158\n",
      "MITE_T_37488|chr3B|737739782|737740047|GT|270|F1547 157\n",
      "MITE_T_122128|chr6D|179391293|179391999|GC|10|F5670 156\n",
      "MITE_T_27623|chr3A|7575062|7575349|AT|14|F1098 155\n",
      "MITE_T_80277|chr6A|39005618|39005766|GC|38|F3418 155\n",
      "MITE_T_39160|chr3D|485206788|485207049|AT|272|F1623 155\n",
      "MITE_T_37337|chr3A|12325407|12325672|GT|276|F1540 154\n",
      "MITE_T_18033|chr2A|651807449|651807769|TTG|22|F745 153\n",
      "MITE_T_5156|chr2D|67427896|67428286|TA|14|F313 153\n",
      "MITE_T_10820|chr1B|653425060|653425404|TA|16|F568 153\n",
      "MITE_T_122142|chr1A|489569108|489569181|TA|77|F5673 152\n",
      "MITE_T_45604|chr7D|37852709|37852951|AT|10|F1889 152\n",
      "MITE_T_9370|chr7D|561711554|561711906|TA|32|F533 151\n",
      "MITE_T_122420|chr7B|196390826|196390889|TC|65|F5719 150\n",
      "MITE_T_13263|chr6B|258568310|258568644|AA|45|F624 147\n",
      "MITE_T_119570|chr4D|117428244|117428325|TA|86|F5443 146\n",
      "MITE_T_16966|chr6B|692240754|692241079|CG|23|F714 146\n",
      "MITE_T_35550|chr5B|657711993|657712262|AC|276|F1465 146\n",
      "MITE_T_38136|chr3A|667589217|667589480|AT|45|F1577 145\n",
      "MITE_T_122157|chr1B|142039652|142039724|TTT|72|F5676 145\n",
      "MITE_T_80232|chr3B|177086369|177086518|AATT|163|F3415 145\n",
      "MITE_T_124172|chr3D|587725334|587725993|CCGG|14|F5820 144\n",
      "MITE_T_124538|chr7A|192510923|192511561|GCC|13|F5842 144\n",
      "MITE_T_124597|chr4B|542957296|542957930|GC|22|F5843 142\n",
      "MITE_T_20134|chr5D|397317317|397317628|TA|36|F835 142\n",
      "MITE_T_128227|chr4D|221295421|221295921|AT|100|F6005 142\n",
      "MITE_T_8340|chr2D|418074472|418074835|AAATTT|68|F473 140\n",
      "MITE_T_3935|chr5B|585336901|585337306|AT|24|F248 140\n",
      "MITE_T_20379|chr2D|474791833|474792144|AT|34|F843 140\n",
      "MITE_T_45917|chr2D|390705612|390705852|AT|249|F1916 140\n",
      "MITE_T_27746|chr3D|480956929|480957216|TA|24|F1106 139\n",
      "MITE_T_28243|chr3A|77537043|77537328|TAA|20|F1122 138\n",
      "MITE_T_28465|chr7A|110701750|110702034|TAA|41|F1135 138\n",
      "MITE_T_64193|chr2B|342326529|342326706|ATGCAT|11|F2573 137\n",
      "MITE_T_122469|chr6D|8551035|8551097|TA|66|F5727 137\n",
      "MITE_T_122767|chr1A|363454152|363454208|TA|20|F5750 137\n",
      "MITE_T_91357|chr3A|19299522|19299644|TA|23|F3965 136\n",
      "MITE_T_65766|chr7A|665996678|665996850|GC|18|F2664 136\n",
      "MITE_T_22805|chr2A|19043260|19043561|TA|28|F937 136\n",
      "MITE_T_30738|chr5A|167961149|167961427|GGC|21|F1231 134\n",
      "MITE_T_126385|chr4A|693629149|693629727|AT|10|F5901 133\n",
      "MITE_T_122505|chr5D|549645438|549645498|AT|66|F5734 131\n",
      "MITE_T_24760|chr2B|564438942|564439239|CTTATAAG|10|F988 130\n",
      "MITE_T_39254|chr4D|136189403|136189664|GAA|54|F1628 130\n",
      "MITE_T_27175|chr5B|586525163|586525453|AA|301|F1077 130\n",
      "MITE_T_59190|chr3D|217587528|217587725|TA|32|F2287 129\n",
      "MITE_T_81179|chr4D|362346263|362346402|TAA|15|F3488 129\n",
      "MITE_T_22264|chr5B|303229099|303229403|ATGT|30|F913 128\n",
      "MITE_T_5731|chr3A|520867711|520868094|TATATATATA|414|F347 126\n",
      "MITE_T_6291|chr5D|245053842|245054221|AT|68|F374 126\n",
      "MITE_T_59633|chr6B|449174952|449175146|GT|27|F2315 125\n",
      "MITE_T_53431|chr6B|460931988|460932210|TTAC|41|F2099 124\n",
      "MITE_T_80603|chr3A|561038566|561038710|GC|38|F3448 123\n",
      "MITE_T_50634|chr7A|17693940|17694177|TA|249|F1978 122\n",
      "MITE_T_82229|chr4D|428946359|428946493|TA|14|F3558 122\n",
      "MITE_T_22642|chr7A|732466985|732467287|AT|67|F933 121\n",
      "MITE_T_77609|chr5D|112946001|112946157|GC|36|F3313 120\n",
      "MITE_T_100628|chr2B|799161043|799161149|AA|108|F4420 120\n",
      "MITE_T_59472|chr7A|40782219|40782414|CTAG|208|F2303 119\n",
      "MITE_T_24774|chr6A|250073701|250073998|AT|27|F989 119\n",
      "MITE_T_41216|chr5D|487297573|487297830|TA|269|F1738 119\n",
      "MITE_T_78325|chr6B|159156784|159156937|TT|157|F3355 119\n",
      "MITE_T_4810|chr4A|407589661|407590055|AT|13|F289 118\n"
     ]
    },
    {
     "name": "stdout",
     "output_type": "stream",
     "text": [
      "MITE_T_25573|chr3A|488313629|488313924|TA|29|F1016 117\n",
      "MITE_T_1096|chr5A|632649841|632650287|TA|68|F94 116\n",
      "MITE_T_10989|chr4B|586766004|586766347|ATAA|34|F574 116\n",
      "MITE_T_7160|chr5B|562199193|562199567|TA|13|F411 116\n",
      "MITE_T_43425|chr7A|637299793|637300038|ACTT|244|F1846 115\n",
      "MITE_T_43358|chr4B|36970242|36970487|TTTTT|245|F1842 112\n",
      "MITE_T_50622|chr4A|456298952|456299189|TA|241|F1976 110\n",
      "MITE_T_102922|chr5A|472310931|472311033|AT|103|F4578 110\n",
      "MITE_T_49304|chr4A|669380076|669380316|AT|249|F1922 109\n",
      "MITE_T_59735|chr1D|121242275|121242467|TAA|16|F2327 108\n",
      "MITE_T_122424|chr7B|296330826|296330889|ACT|69|F5720 108\n",
      "MITE_T_128023|chr1B|48775007|48775512|AT|38|F5998 108\n",
      "MITE_T_7499|chr7A|38088429|38088799|CG|10|F425 108\n",
      "MITE_T_118965|chr2B|793544884|793544965|TA|85|F5431 107\n",
      "MITE_T_24819|chr2D|116593589|116593886|AT|309|F993 105\n",
      "MITE_T_13778|chr2B|400560116|400560447|TA|10|F652 104\n",
      "MITE_T_122243|chr5D|389438723|389438794|TA|76|F5687 104\n",
      "MITE_T_30927|chr7A|463416600|463416878|GGC|48|F1241 103\n",
      "MITE_T_49793|chr5D|395950771|395951010|AT|251|F1947 103\n",
      "MITE_T_1975|chr6D|11489410|11489841|TA|28|F142 101\n",
      "MITE_T_122416|chr6B|95327505|95327569|TAT|67|F5718 101\n",
      "MITE_T_37534|chr2B|118710096|118710361|AT|274|F1549 100\n",
      "MITE_T_62137|chr3D|350666196|350666379|AT|47|F2463 100\n",
      "MITE_T_122774|chr3D|49639391|49639447|TA|20|F5751 99\n",
      "MITE_T_3491|chr2B|461744886|461745295|CTTACAGC|12|F230 99\n",
      "MITE_T_1272|chr5D|486260365|486260808|AT|21|F100 98\n",
      "MITE_T_58150|chr6B|38210737|38210942|GTC|24|F2228 98\n",
      "MITE_T_122440|chr2B|49220926|49220989|TA|23|F5722 97\n",
      "MITE_T_35179|chr3B|109359646|109359917|GC|64|F1445 97\n",
      "MITE_T_53086|chr1A|66885504|66885729|TA|24|F2078 97\n",
      "MITE_T_79000|chr7A|433009473|433009624|TA|23|F3397 96\n",
      "MITE_T_116078|chr1A|513118102|513118186|CA|84|F5288 96\n",
      "MITE_T_81650|chr3D|107670952|107671089|ATT|40|F3523 96\n",
      "MITE_T_28441|chr5B|528708950|528709235|GGCC|16|F1131 95\n",
      "MITE_T_6824|chr5D|410251892|410252268|CG|19|F394 95\n",
      "MITE_T_60610|chr1A|99154861|99155050|TA|26|F2373 94\n",
      "MITE_T_109559|chr7D|180444923|180445014|AATT|99|F4985 94\n",
      "MITE_T_58490|chr2A|428313851|428314054|ATA|62|F2238 94\n",
      "MITE_T_108015|chr1A|587861305|587861398|AA|93|F4878 93\n",
      "MITE_T_120469|chr1A|57407736|57407817|TA|85|F5505 93\n",
      "MITE_T_39222|chr2A|46082330|46082591|AT|269|F1625 92\n",
      "MITE_T_122778|chr1A|289338840|289338895|AT|61|F5752 92\n",
      "MITE_T_27649|chr5A|404240948|404241235|TAA|25|F1101 92\n",
      "MITE_T_672|chr4A|673785491|673785950|TA|428|F56 92\n",
      "MITE_T_39923|chr1A|532234504|532234763|TA|19|F1674 91\n",
      "MITE_T_84941|chr4A|195105680|195105809|TAA|12|F3652 91\n",
      "MITE_T_62166|chr3D|77158511|77158694|CT|20|F2466 91\n",
      "MITE_T_81890|chr5B|646478037|646478173|GC|42|F3536 91\n",
      "MITE_T_5554|chr7B|543906188|543906573|AT|31|F338 91\n",
      "MITE_T_53393|chr4B|177395682|177395904|TA|56|F2098 90\n",
      "MITE_T_80267|chr5B|375641440|375641588|TA|23|F3417 90\n",
      "MITE_T_99699|chr1B|583853423|583853532|GATC|124|F4355 88\n",
      "MITE_T_121210|chr1A|49299233|49299314|TA|85|F5571 88\n",
      "MITE_T_127979|chr5A|16415787|16416294|GGCC|10|F5996 88\n",
      "MITE_T_88166|chr7D|177466687|177466812|TCACCTA|123|F3788 87\n",
      "MITE_T_49394|chr1D|5077597|5077837|TA|246|F1930 87\n",
      "MITE_T_82952|chr2B|710008031|710008162|TAGT|12|F3591 86\n",
      "MITE_T_122550|chr4D|499418998|499419700|GAGGCATT|11|F5740 86\n",
      "MITE_T_6078|chr6A|2750192|2750572|TCTCAT|17|F366 86\n",
      "MITE_T_7641|chr3D|19786930|19787299|TA|10|F438 84\n",
      "MITE_T_116906|chr4A|642446065|642446148|AT|87|F5323 84\n",
      "MITE_T_41460|chr1A|578924558|578924814|TA|266|F1757 84\n",
      "MITE_T_77788|chr1B|150543235|150543391|AT|18|F3320 83\n",
      "MITE_T_54495|chr3B|81823894|81824112|TA|226|F2141 81\n",
      "MITE_T_53526|chr1A|536569456|536569677|TA|78|F2105 81\n",
      "MITE_T_6509|chr1D|356358156|356358535|TTCCGGAA|10|F378 81\n",
      "MITE_T_67628|chr7B|471021156|471021325|AT|36|F2741 80\n",
      "MITE_T_39138|chr3B|557807925|557808187|TA|40|F1621 80\n",
      "MITE_T_53074|chr7D|411305730|411305955|GC|234|F2077 80\n",
      "MITE_T_122544|chr7B|355482993|355483052|TA|65|F5739 79\n",
      "MITE_T_91108|chr7A|105170283|105170405|TA|20|F3951 79\n",
      "MITE_T_122797|chr5D|174010604|174010657|TA|13|F5756 79\n",
      "MITE_T_463|chr1B|316237701|316238164|GCTGGG|26|F48 78\n",
      "MITE_T_112058|chr3B|3251000|3251088|AT|93|F5111 77\n",
      "MITE_T_7042|chr1D|260402550|260402924|CGG|86|F406 77\n",
      "MITE_T_6025|chr2D|10505023|10505404|TG|393|F361 76\n",
      "MITE_T_65137|chr2D|33774450|33774623|GC|21|F2630 76\n",
      "MITE_T_7780|chr3D|287050816|287051184|ACCTGGTGG|385|F444 76\n",
      "MITE_T_35315|chr6B|304400316|304400586|TT|13|F1453 76\n",
      "MITE_T_97046|chr4A|142800823|142800935|Tc|116|F4281 75\n",
      "MITE_T_96997|chr6A|208238263|208238375|TC|116|F4277 75\n",
      "MITE_T_36079|chr3B|592644119|592644386|AT|19|F1487 75\n",
      "MITE_T_53162|chr3B|440491586|440491810|TTT|73|F2085 74\n",
      "MITE_T_127312|chr6B|101623966|101624766|GTTTCGGT|13|F5948 74\n",
      "MITE_T_123399|chr7A|214234169|214234969|TACA|16|F5786 73\n",
      "MITE_T_96745|chr6B|532909256|532909369|GA|118|F4253 72\n",
      "MITE_T_73784|chr3A|9735397|9735559|GA|26|F3033 71\n",
      "MITE_T_107530|chr7D|506006951|506007045|CAAA|95|F4857 71\n",
      "MITE_T_122264|chr5B|692012665|692012736|AA|73|F5691 71\n",
      "MITE_T_55123|chr4A|278316028|278316243|CG|39|F2175 71\n",
      "MITE_T_91121|chr4A|743550386|743550508|TG|123|F3953 71\n",
      "MITE_T_122760|chr1D|23299590|23299647|TA|21|F5749 71\n",
      "MITE_T_107980|chr5B|15642429|15642522|GATC|101|F4875 70\n",
      "MITE_T_62601|chr3B|716526624|716526805|AT|57|F2506 70\n",
      "MITE_T_53662|chr1A|239094916|239095136|TA|85|F2114 70\n",
      "MITE_T_21281|chr7B|380509227|380509535|GC|10|F861 69\n",
      "MITE_T_104796|chr4D|6688416|6688513|TA|92|F4682 69\n",
      "MITE_T_1012|chr1B|524162282|524162729|TGGCCA|17|F91 69\n",
      "MITE_T_24711|chr3D|388784976|388785274|TA|30|F985 69\n",
      "MITE_T_81455|chr7B|733885518|733885656|TA|140|F3506 69\n",
      "MITE_T_58154|chr5D|38991406|38991611|AT|70|F2229 69\n",
      "MITE_T_39673|chr5D|488096996|488097256|TA|54|F1663 68\n",
      "MITE_T_122748|chr4B|9822500|9822557|TA|20|F5747 68\n",
      "MITE_T_127606|chr4A|30152108|30152643|TA|69|F5965 68\n",
      "MITE_T_12619|chr3A|165328305|165328641|CA|25|F613 68\n",
      "MITE_T_7448|chr2A|640097710|640098080|TA|17|F422 68\n",
      "MITE_T_121627|chr3D|279927711|279927792|TA|86|F5605 68\n",
      "MITE_T_32313|chr4D|485489038|485489313|CA|25|F1292 67\n",
      "MITE_T_126441|chr4A|102965671|102966248|GC|10|F5905 67\n",
      "MITE_T_13236|chr2A|131718701|131719035|TA|14|F623 67\n",
      "MITE_T_54464|chr2D|552547260|552547478|TA|10|F2137 66\n",
      "MITE_T_127128|chr6D|100669834|100670387|ATTCCACC|11|F5938 66\n",
      "MITE_T_7253|chr7B|603507289|603507663|GA|16|F413 66\n",
      "MITE_T_12740|chr3A|17589159|17589494|GAGAGA|14|F617 65\n",
      "MITE_T_17750|chr6B|104211362|104211684|AA|50|F729 65\n",
      "MITE_T_33673|chr4D|325892205|325892478|TA|10|F1354 65\n",
      "MITE_T_7902|chr2B|223727860|223728227|CACGCCGGC|79|F449 64\n",
      "MITE_T_127696|chr1A|395614663|395615190|GC|18|F5971 64\n",
      "MITE_T_41572|chr5A|554231930|554232185|GT|28|F1765 64\n",
      "MITE_T_398|chr4D|488687433|488687902|TGGCCA|17|F40 63\n",
      "MITE_T_40344|chr7A|436759709|436759968|TATATATATA|287|F1685 63\n",
      "MITE_T_122312|chr3D|515014774|515014843|TA|75|F5698 63\n",
      "MITE_T_11103|chr1A|364749939|364750279|TG|342|F585 63\n",
      "MITE_T_62405|chr4B|477161347|477161529|AT|36|F2480 62\n",
      "MITE_T_110835|chr2D|299891016|299891105|TT|91|F5045 62\n",
      "MITE_T_28228|chr3A|691820716|691821002|AT|52|F1121 62\n",
      "MITE_T_94471|chr2B|158642095|158642212|TA|20|F4099 62\n",
      "MITE_T_78336|chr3A|469077434|469077587|TA|27|F3356 60\n",
      "MITE_T_24841|chr6A|604571831|604572128|TA|25|F996 60\n",
      "MITE_T_20806|chr1D|277361300|277361610|GC|10|F849 59\n",
      "MITE_T_6730|chr3D|13436528|13436905|GTGTGTGCT|90|F388 59\n",
      "MITE_T_122384|chr2D|66821298|66821362|TG|66|F5711 59\n",
      "MITE_T_3262|chr6A|591797768|591798182|TA|55|F215 59\n",
      "MITE_T_52454|chr2A|300537500|300538241|TA|20|F2041 58\n",
      "MITE_T_122392|chr6B|16434844|16434908|TA|69|F5713 58\n",
      "MITE_T_91438|chr3A|608386695|608386816|TA|41|F3973 58\n",
      "MITE_T_18656|chr7A|636246065|636246382|TA|17|F782 58\n",
      "MITE_T_13426|chr1A|589094565|589094898|CAC|22|F632 57\n",
      "MITE_T_23470|chr4B|529704125|529704424|AC|10|F968 57\n",
      "MITE_T_4062|chr5D|87153304|87153707|AT|25|F255 57\n",
      "MITE_T_59775|chr2D|234362348|234362540|GC|71|F2329 57\n",
      "MITE_T_38754|chr1B|311738474|311738737|TA|39|F1596 57\n",
      "MITE_T_54526|chr2A|217290311|217290528|AT|24|F2144 57\n",
      "MITE_T_77736|chr7A|128969938|128970094|ATT|22|F3315 57\n",
      "MITE_T_34289|chr6A|88352260|88352533|AT|57|F1403 57\n",
      "MITE_T_31008|chr3A|99512349|99512626|GGC|15|F1251 56\n",
      "MITE_T_31851|chr7A|671784502|671784778|GC|36|F1278 56\n",
      "MITE_T_42967|chr4B|261696206|261696452|AA|77|F1830 56\n",
      "MITE_T_80210|chr5A|566033429|566033578|AATT|161|F3411 56\n",
      "MITE_T_77857|chr7D|301885649|301885804|CATATATTTG|40|F3326 56\n",
      "MITE_T_79104|chr1B|668967790|668967940|AATT|164|F3405 55\n",
      "MITE_T_3036|chr7D|274725872|274726289|CG|41|F201 55\n",
      "MITE_T_41342|chr1B|531534116|531534372|TA|41|F1748 54\n",
      "MITE_T_61369|chr1D|471759072|471759258|ATAT|38|F2411 54\n",
      "MITE_T_82830|chr5D|423532392|423532524|TA|23|F3585 54\n",
      "MITE_T_4211|chr1A|586084579|586084980|CTCCAAA|40|F261 54\n",
      "MITE_T_122341|chr2B|519335293|519335360|TA|71|F5704 53\n",
      "MITE_T_43396|chr5A|600946667|600946912|CG|26|F1845 53\n",
      "MITE_T_20857|chr6D|128953401|128953710|TA|10|F853 53\n",
      "MITE_T_76357|chr7D|610856775|610856935|TA|37|F3202 52\n",
      "MITE_T_82303|chr5A|86548460|86548594|TC|22|F3564 52\n",
      "MITE_T_39686|chr7B|629600557|629600817|CT|270|F1664 52\n",
      "MITE_T_54561|chr5B|353625612|353625829|TTAA|64|F2146 52\n",
      "MITE_T_25271|chr1B|171126707|171127003|AT|22|F1005 52\n",
      "MITE_T_8254|chr7B|85125862|85126227|CCTA|14|F467 52\n",
      "MITE_T_116193|chr3D|64194774|64194858|TA|90|F5295 52\n",
      "MITE_T_6900|chr1A|419036042|419036417|GC|24|F401 51\n",
      "MITE_T_31839|chr5B|573145210|573145486|GC|35|F1276 51\n",
      "MITE_T_128190|chr1B|55204632|55205132|TC|14|F6004 51\n",
      "MITE_T_22538|chr3B|13562761|13563064|TA|26|F925 51\n"
     ]
    },
    {
     "name": "stdout",
     "output_type": "stream",
     "text": [
      "MITE_T_9070|chr7D|137950988|137951344|AG|15|F512 51\n",
      "MITE_T_18434|chr1A|209583562|209583880|TC|39|F764 51\n",
      "MITE_T_82651|chr1B|3239953|3240085|TA|23|F3575 51\n",
      "MITE_T_99676|chr3B|584740772|584740881|TA|41|F4351 50\n",
      "MITE_T_81786|chr2B|718602930|718603066|TGAT|140|F3528 50\n",
      "MITE_T_3094|chr2D|612709949|612710366|TCT|422|F202 50\n",
      "MITE_T_4591|chr1B|92883178|92883576|ACTACGGCG|81|F275 50\n",
      "MITE_T_2056|chr5A|501847989|501848420|TA|35|F145 50\n",
      "MITE_T_127865|chr5B|655375559|655376073|AT|27|F5988 50\n",
      "MITE_T_53651|chr2B|330437298|330437518|TATTA|23|F2113 50\n",
      "MITE_T_126212|chr2B|787569605|787570405|GTA|14|F5891 50\n",
      "MITE_T_33764|chr1A|521672979|521673252|TA|284|F1360 50\n",
      "MITE_T_27708|chr5B|630100157|630100444|TT|288|F1105 49\n",
      "MITE_T_631|chr1A|468600527|468600987|TA|13|F54 49\n",
      "MITE_T_122398|chr2D|334331512|334331576|TA|69|F5714 49\n",
      "MITE_T_1763|chr7D|117216386|117216820|AT|434|F127 48\n",
      "MITE_T_58982|chr5B|558456728|558456927|TTA|47|F2269 48\n",
      "MITE_T_7294|chr7B|290709419|290710178|AGCT|11|F414 48\n",
      "MITE_T_25628|chr3B|154190323|154190618|TTA|19|F1020 48\n",
      "MITE_T_3828|chr6A|17981216|17981622|GC|13|F239 48\n",
      "MITE_T_123885|chr5D|531464980|531465767|AT|17|F5815 47\n",
      "MITE_T_27284|chr2D|247787011|247787300|ATAC|24|F1082 47\n",
      "MITE_T_54520|chr6D|156747728|156747945|ATAT|78|F2143 47\n",
      "MITE_T_122412|chr3D|548553423|548553487|TA|71|F5717 47\n",
      "MITE_T_4073|chr6D|105556818|105557220|TTT|84|F256 47\n",
      "MITE_T_115800|chr2D|483542211|483542296|CA|26|F5265 47\n",
      "MITE_T_53607|chr4D|106653889|106654109|AT|66|F2111 46\n",
      "MITE_T_128350|chr7D|121214030|121214521|GCGC|13|F6011 46\n",
      "MITE_T_17974|chr6B|262047605|262047926|ATCCAA|13|F738 46\n",
      "MITE_T_57888|chr6D|456740904|456741110|AT|10|F2221 45\n",
      "MITE_T_58925|chr2B|710936823|710937023|CTGC|25|F2264 45\n",
      "MITE_T_16594|chr5B|528378882|528379208|TA|11|F702 45\n",
      "MITE_T_4193|chr4A|429414239|429414640|TTT|83|F260 45\n",
      "MITE_T_18643|chr7B|606129467|606129784|GC|40|F781 45\n",
      "MITE_T_808|chr5B|512235755|512236209|TATA|15|F75 45\n",
      "MITE_T_35477|chr7A|418669406|418669675|AT|48|F1462 45\n",
      "MITE_T_41924|chr3D|38183331|38183583|TGCA|86|F1779 45\n",
      "MITE_T_1090|chr1D|416482179|416482625|TA|10|F93 44\n",
      "MITE_T_122473|chr6B|166127584|166127645|TA|66|F5728 44\n",
      "MITE_T_53116|chr6A|155798548|155798772|CTTGCA|16|F2081 44\n",
      "MITE_T_21430|chr5B|239716232|239716539|ATT|306|F871 44\n",
      "MITE_T_101006|chr4A|583911697|583911802|GC|112|F4445 44\n",
      "MITE_T_6969|chr7B|530893189|530893564|CCTTGGGC|12|F402 44\n",
      "MITE_T_121650|chr3D|45931334|45931415|TA|85|F5609 44\n",
      "MITE_T_41697|chr1D|270280283|270280537|TTA|14|F1771 44\n",
      "MITE_T_5047|chr1B|374867382|374867772|CT|399|F306 43\n",
      "MITE_T_42861|chr7B|570276696|570276943|CA|253|F1826 43\n",
      "MITE_T_128137|chr2B|557354954|557355455|AG|47|F6001 43\n",
      "MITE_T_77142|chr4B|399193263|399193421|CTAG|168|F3274 43\n",
      "MITE_T_56522|chr2A|762883268|762883475|TT|69|F2214 43\n",
      "MITE_T_74295|chr5A|510218032|510218194|TA|41|F3045 42\n",
      "MITE_T_41870|chr3A|714622353|714622606|AT|15|F1776 42\n",
      "MITE_T_36553|chr6A|164937266|164937532|ATC|10|F1511 42\n",
      "MITE_T_89510|chr5B|36727537|36727661|TA|10|F3842 42\n",
      "MITE_T_91866|chr6B|623367983|623368103|AT|130|F4008 42\n",
      "MITE_T_55236|chr6D|352830311|352830525|TAG|64|F2187 42\n",
      "MITE_T_211|chr4A|704000206|704000685|AT|19|F20 42\n",
      "MITE_T_691|chr2D|312022429|312022887|AT|19|F59 41\n",
      "MITE_T_58697|chr5B|500897775|500897977|GC|63|F2251 41\n",
      "MITE_T_78689|chr4A|605661423|605661574|AT|51|F3381 40\n",
      "MITE_T_100779|chr2A|246043261|246043366|GC|110|F4427 40\n",
      "MITE_T_103301|chr1D|360478835|360478935|AC|100|F4605 40\n",
      "MITE_T_138|chr2A|185965170|185965650|GA|24|F17 40\n",
      "MITE_T_41543|chr2D|629213979|629214234|TA|265|F1764 40\n",
      "MITE_T_59703|chr2D|627580950|627581143|TAA|16|F2322 40\n",
      "MITE_T_58879|chr6D|41542478|41542678|TA|31|F2259 40\n",
      "MITE_T_5526|chr3B|772005577|772005962|GC|14|F334 39\n",
      "MITE_T_106473|chr4A|636365130|636365225|AT|100|F4801 39\n",
      "MITE_T_120622|chr6B|255535421|255535502|TA|85|F5512 38\n",
      "MITE_T_59144|chr2B|280479760|280479957|TCA|23|F2285 38\n",
      "MITE_T_127648|chr6A|375530867|375531398|CCTA|13|F5968 38\n",
      "MITE_T_54586|chr6B|572568534|572568751|TT|41|F2149 38\n",
      "MITE_T_82266|chr2A|710800220|710800354|AT|27|F3560 37\n",
      "MITE_T_5483|chr7B|10967466|10967851|TA|21|F332 37\n",
      "MITE_T_58158|chr2D|446317622|446317827|AT|219|F2230 37\n",
      "MITE_T_120952|chr5D|297499827|297499908|TA|85|F5543 37\n",
      "MITE_T_116128|chr3A|647465715|647465799|AT|88|F5291 37\n",
      "MITE_T_118184|chr7D|45182696|45182778|TA|88|F5407 37\n",
      "MITE_T_18880|chr7A|304324816|304325131|CTG|23|F793 37\n",
      "MITE_T_122371|chr2D|49386162|49386228|TG|70|F5708 37\n",
      "MITE_T_122501|chr5D|472275284|472275344|ACT|19|F5733 36\n",
      "MITE_T_91535|chr5B|533892982|533893103|AT|48|F3985 36\n",
      "MITE_T_123672|chr7A|664797867|664798545|CG|16|F5800 36\n",
      "MITE_T_25679|chr6A|107113842|107114136|CA|30|F1024 36\n",
      "MITE_T_123153|chr3B|156569849|156570544|AT|10|F5772 36\n",
      "MITE_T_38166|chr7D|231096515|231096778|AAG|38|F1578 36\n",
      "MITE_T_3772|chr1A|14852328|14852735|CCA|412|F237 36\n",
      "MITE_T_80653|chr2A|672533845|672534570|TA|17|F3453 35\n",
      "MITE_T_1954|chr5B|101020283|101020716|ATATATATAT|114|F140 35\n",
      "MITE_T_111748|chr1B|410793962|410794050|TA|93|F5099 35\n",
      "MITE_T_62667|chr5B|609609497|609609678|GCC|20|F2513 35\n",
      "MITE_T_99236|chr7A|18998053|18998163|TA|46|F4322 35\n",
      "MITE_T_27199|chr6D|328560250|328560539|ATAT|309|F1079 34\n",
      "MITE_T_104827|chr5D|264634954|264635051|AA|98|F4685 34\n",
      "MITE_T_34894|chr3B|139432319|139432591|TA|40|F1430 33\n",
      "MITE_T_4506|chr4A|13751467|13751867|ATAGAA|13|F267 33\n",
      "MITE_T_11049|chr7B|148204584|148204925|TA|28|F581 33\n",
      "MITE_T_1992|chr7A|307769318|307769749|TG|10|F143 33\n",
      "MITE_T_23224|chr7D|105211960|105212259|GATC|48|F957 33\n",
      "MITE_T_113748|chr3D|370115712|370115799|TT|87|F5167 33\n",
      "MITE_T_58763|chr5D|377314964|377315165|ATTAAT|39|F2252 33\n",
      "MITE_T_127660|chr1B|602416166|602416695|GGG|18|F5970 32\n",
      "MITE_T_58136|chr1A|497901708|497901913|AT|54|F2227 32\n",
      "MITE_T_14157|chr7B|77190256|77190586|TTAA|24|F667 32\n",
      "MITE_T_3801|chr2D|488631131|488631537|GC|26|F238 32\n",
      "MITE_T_9027|chr3B|407251259|407251616|GC|22|F510 32\n",
      "MITE_T_5289|chr6D|271074414|271074801|GC|24|F322 32\n",
      "MITE_T_24792|chr2A|495960185|495960482|AT|41|F990 32\n",
      "MITE_T_22874|chr1A|428212199|428212500|AATT|10|F942 32\n",
      "MITE_T_79138|chr3B|153587020|153587169|TA|160|F3406 31\n",
      "MITE_T_11070|chr6D|265215744|265216085|AT|15|F583 31\n",
      "MITE_T_81881|chr7B|619732093|619732229|GC|12|F3534 31\n",
      "MITE_T_110384|chr6A|288409485|288409575|TA|95|F5018 30\n",
      "MITE_T_126420|chr2B|795994724|795995302|AT|10|F5903 30\n",
      "MITE_T_124868|chr4D|137037827|137038457|TGG|21|F5846 30\n",
      "MITE_T_20032|chr5A|649599113|649599425|TA|53|F826 30\n",
      "MITE_T_43074|chr1B|333700391|333700637|TCCAGTG|25|F1833 30\n",
      "MITE_T_53183|chr6D|111348236|111348459|AAT|59|F2088 30\n",
      "MITE_T_127812|chr1D|92206679|92207199|TGCATGGGG|533|F5983 30\n",
      "MITE_T_4962|chr6D|61133919|61134311|AAT|51|F300 30\n",
      "MITE_T_4234|chr6D|57784900|57785301|AAA|422|F263 30\n",
      "MITE_T_52979|chr5B|172749798|172750024|TA|65|F2065 30\n",
      "MITE_T_124310|chr2A|470644220|470644873|TGTG|18|F5825 30\n",
      "MITE_T_91742|chr5D|254848556|254848676|AT|45|F4000 30\n",
      "MITE_T_86210|chr1A|538682243|538682371|TA|18|F3706 29\n",
      "MITE_T_1420|chr7A|399518194|399518635|GC|14|F109 29\n",
      "MITE_T_59708|chr5A|374628000|374628193|GC|44|F2323 29\n",
      "MITE_T_58448|chr4A|33567617|33567821|TC|207|F2235 29\n",
      "MITE_T_60696|chr6A|606716633|606716822|TGCA|27|F2376 29\n",
      "MITE_T_110586|chr5A|482125511|482125601|TA|97|F5027 29\n",
      "MITE_T_53060|chr3B|34408231|34408456|TA|31|F2074 29\n",
      "MITE_T_104822|chr2B|736884094|736884191|GATC|107|F4684 28\n",
      "MITE_T_55311|chr3B|521980372|521980585|CA|43|F2189 28\n",
      "MITE_T_69835|chr7B|728688673|728688840|TATACG|10|F2848 28\n",
      "MITE_T_1596|chr3A|240091987|240092424|TGA|66|F121 28\n",
      "MITE_T_120804|chr5A|330967942|330968023|TA|85|F5527 28\n",
      "MITE_T_18482|chr6B|543848589|543848907|TA|12|F769 28\n",
      "MITE_T_109633|chr6D|316155055|316155146|ATT|97|F4990 27\n",
      "MITE_T_81350|chr2B|97183349|97183487|TTA|13|F3501 27\n",
      "MITE_T_18853|chr1D|322265632|322265947|AT|38|F792 27\n",
      "MITE_T_126343|chr4A|726289855|726290434|AT|37|F5898 27\n",
      "MITE_T_3204|chr5A|650289061|650289476|CATATG|10|F210 27\n",
      "MITE_T_125370|chr4B|346526652|346527261|CG|216|F5865 27\n",
      "MITE_T_4658|chr7D|100665639|100666035|GCCCAGAG|14|F281 27\n",
      "MITE_T_127996|chr7D|522867569|522868076|AT|41|F5997 27\n",
      "MITE_T_28400|chr4B|164744006|164744754|GGTCTAGT|13|F1128 27\n",
      "MITE_T_35266|chr4A|710416261|710416531|AT|74|F1450 27\n",
      "MITE_T_65121|chr1D|473745489|473745662|CTCCTGTC|17|F2628 27\n",
      "MITE_T_21817|chr7B|668915638|668915944|ATT|319|F892 27\n",
      "MITE_T_10859|chr6B|320430537|320430880|TG|40|F572 26\n",
      "MITE_T_1864|chr2D|190096714|190097147|TT|440|F134 26\n",
      "MITE_T_5801|chr6A|567931845|567932227|ACTGTA|18|F353 26\n",
      "MITE_T_123316|chr5A|552947341|552948028|CCGTCTAC|13|F5784 26\n",
      "MITE_T_1215|chr1B|688071460|688071905|AT|38|F97 26\n",
      "MITE_T_18374|chr1B|133217154|133217473|ACTTTTGTG|22|F759 26\n",
      "MITE_T_11398|chr3B|745737179|745737973|GG|13|F590 25\n",
      "MITE_T_116919|chr7A|31103423|31103506|ATAT|92|F5325 25\n",
      "MITE_T_112079|chr1A|567969922|567970010|AT|93|F5112 25\n",
      "MITE_T_102964|chr1D|324624125|324624226|AT|109|F4583 25\n",
      "MITE_T_59400|chr4D|502809124|502809320|ACAC|30|F2297 25\n",
      "MITE_T_122453|chr1B|681004823|681004885|TA|69|F5724 25\n",
      "MITE_T_127591|chr4A|531551512|531552050|AT|23|F5963 25\n"
     ]
    },
    {
     "name": "stdout",
     "output_type": "stream",
     "text": [
      "MITE_T_123752|chr4D|374780975|374781645|TATCATA|215|F5808 25\n",
      "MITE_T_13555|chr4D|438105194|438105526|CC|37|F644 25\n",
      "MITE_T_17979|chr5D|380185815|380186136|TTA|18|F739 25\n",
      "MITE_T_116109|chr1D|201494984|201495068|AT|88|F5289 25\n",
      "MITE_T_5975|chr5B|563165478|563165860|TA|63|F355 25\n",
      "MITE_T_81031|chr5B|691008346|691008487|AACTT|25|F3476 24\n",
      "MITE_T_15942|chr4A|455923537|455923865|TAGCTA|10|F683 24\n",
      "MITE_T_2843|chr3B|250979450|250979871|TTT|427|F189 24\n",
      "MITE_T_63333|chr3A|46566923|46567103|AT|24|F2533 24\n",
      "MITE_T_62634|chr5B|34558164|34558345|GGATCC|28|F2509 24\n",
      "MITE_T_35109|chr5B|545363466|545363737|TT|36|F1442 24\n",
      "MITE_T_84212|chr1A|563800375|563800505|GGCC|15|F3621 23\n",
      "MITE_T_6692|chr2D|571202367|571202744|AG|10|F386 23\n",
      "MITE_T_24681|chr6B|52643207|52643505|TA|14|F984 23\n",
      "MITE_T_24189|chr5A|419599761|419600059|GA|32|F979 23\n",
      "MITE_T_91348|chr6B|415874161|415874283|TA|13|F3963 23\n",
      "MITE_T_61089|chr2B|679053954|679054142|TAC|17|F2397 23\n",
      "MITE_T_119642|chr1B|397429381|397429462|TA|85|F5448 23\n",
      "MITE_T_125129|chr5B|360417710|360418330|TA|13|F5851 23\n",
      "MITE_T_73665|chr7A|115825728|115825890|TA|43|F3021 23\n",
      "MITE_T_122711|chr5D|450544035|450544825|CTA|314|F5745 23\n",
      "MITE_T_81916|chr5B|682372439|682372575|CGACGGT|16|F3538 23\n",
      "MITE_T_42883|chr6A|588600882|588601129|TA|261|F1827 23\n",
      "MITE_T_52736|chr1D|418408065|418408293|AA|231|F2054 22\n",
      "MITE_T_53545|chr3A|46456695|46456916|AT|64|F2107 22\n",
      "MITE_T_115992|chr2A|278919349|278919433|TA|89|F5280 22\n",
      "MITE_T_40798|chr5B|361001798|361002056|TCA|16|F1708 22\n",
      "MITE_T_11790|chr3B|478517299|478517637|TA|13|F597 22\n",
      "MITE_T_62123|chr4B|566446487|566446670|ATA|49|F2462 22\n",
      "MITE_T_42459|chr2B|233381823|233382074|ATAT|29|F1789 22\n",
      "MITE_T_64698|chr6B|653759418|653759593|GTGCATGCAC|49|F2607 22\n",
      "MITE_T_6789|chr1D|300024181|300024557|GC|400|F391 22\n",
      "MITE_T_128355|chr1A|82124512|82125001|TAA|38|F6012 22\n",
      "MITE_T_2788|chr3A|727289882|727290303|TGCA|64|F185 22\n",
      "MITE_T_125571|chr3A|530879870|530880478|AT|10|F5868 22\n",
      "MITE_T_10716|chr7D|582600067|582600413|ATAT|12|F557 22\n",
      "MITE_T_128271|chr2D|629275481|629276253|TG|26|F6008 21\n",
      "MITE_T_53388|chr1D|362925905|362926127|ATAT|25|F2097 21\n",
      "MITE_T_65517|chr1A|508355830|508356002|CC|11|F2650 21\n",
      "MITE_T_71195|chr5A|640096029|640096194|AG|16|F2924 21\n",
      "MITE_T_100142|chr3A|131574729|131575520|AC|209|F4388 21\n",
      "MITE_T_24654|chr2B|478891500|478891798|TA|12|F982 21\n",
      "MITE_T_89393|chr2D|618082785|618082909|CA|35|F3838 21\n",
      "MITE_T_127016|chr1D|105132537|105133096|GGATAGTGG|580|F5928 21\n",
      "MITE_T_3712|chr2B|461374517|461374925|AGT|28|F232 21\n",
      "MITE_T_121787|chr2B|546987488|546987569|TA|85|F5625 21\n",
      "MITE_T_59688|chr3B|541526691|541526885|AG|46|F2320 21\n",
      "MITE_T_57852|chr5B|262824401|262824607|TC|67|F2218 21\n",
      "MITE_T_26276|chr7A|257781413|257781705|TC|25|F1057 20\n",
      "MITE_T_118931|chr7D|101615708|101615789|TA|85|F5429 20\n",
      "MITE_T_78345|chr1A|133414335|133414488|GCC|16|F3358 20\n",
      "MITE_T_58103|chr2B|672017881|672018086|AT|17|F2226 20\n",
      "MITE_T_6583|chr5B|691456556|691456934|CACCGGTG|10|F384 20\n",
      "MITE_T_91796|chr6D|38222275|38222395|GG|22|F4004 20\n",
      "MITE_T_20091|chr7B|261204720|261205031|AT|34|F829 20\n",
      "MITE_T_53123|chr5B|232710963|232711187|CA|65|F2082 20\n",
      "MITE_T_9078|chr1A|443122825|443123181|GC|365|F513 20\n",
      "MITE_T_81060|chr4D|449981205|449981345|AA|29|F3480 19\n",
      "MITE_T_91609|chr3B|688380113|688380234|AA|37|F3990 19\n",
      "MITE_T_58079|chr2A|717119627|717119832|TA|26|F2224 19\n",
      "MITE_T_58605|chr5A|645612717|645612920|TCCA|19|F2243 19\n",
      "MITE_T_125291|chr3D|10515959|10516574|TGTG|13|F5861 19\n",
      "MITE_T_107473|chr3B|241364658|241364752|AT|14|F4851 19\n",
      "MITE_T_37566|chr4D|140909649|140909913|AT|23|F1553 19\n",
      "MITE_T_127905|chr7D|500788763|500789276|AT|37|F5989 19\n",
      "MITE_T_25325|chr3A|656742223|656742519|TA|17|F1011 19\n",
      "MITE_T_2234|chr7A|5486253|5486682|GC|20|F152 19\n",
      "MITE_T_71520|chr5D|232417019|232417183|CG|43|F2947 19\n",
      "MITE_T_12166|chr7D|294126892|294127228|TA|52|F609 19\n",
      "MITE_T_62620|chr2D|118031851|118032032|GTGGTAAT|16|F2507 19\n",
      "MITE_T_20583|chr5B|339296059|339296369|AC|33|F846 19\n",
      "MITE_T_125706|chr3B|828042241|828042841|TA|11|F5876 19\n",
      "MITE_T_27182|chr6B|342971635|342971924|CCCCC|87|F1078 19\n",
      "MITE_T_75015|chr4B|311136501|311136662|TA|30|F3091 19\n",
      "MITE_T_78384|chr7B|7237493|7237646|CG|24|F3364 19\n",
      "MITE_T_63991|chr2B|107528964|107529142|ATTAGG|13|F2556 19\n",
      "MITE_T_22970|chr5A|493341243|493341543|AT|87|F950 18\n",
      "MITE_T_22391|chr2D|125438959|125439263|TA|22|F916 18\n",
      "MITE_T_126155|chr2B|695687217|695687807|TA|17|F5888 18\n",
      "MITE_T_316|chr1A|335048447|335048919|CT|15|F33 18\n",
      "MITE_T_20268|chr6A|600129566|600129877|AA|38|F840 18\n",
      "MITE_T_125641|chr4B|596611682|596612287|TA|18|F5872 18\n",
      "MITE_T_110766|chr6D|87467520|87467610|AT|96|F5041 18\n",
      "MITE_T_374|chr2B|581610238|581610707|CAT|17|F38 18\n",
      "MITE_T_122517|chr3A|374433105|374433164|TA|64|F5736 18\n",
      "MITE_T_120811|chr3D|25130690|25130771|TA|85|F5528 18\n",
      "MITE_T_2252|chr5B|93412656|93413085|GG|29|F154 18\n",
      "MITE_T_80681|chr5D|486749723|486749866|AT|17|F3456 18\n",
      "MITE_T_37196|chr6A|337753619|337753884|AC|268|F1531 18\n",
      "MITE_T_7566|chr6B|171442965|171443334|TTA|18|F431 18\n",
      "MITE_T_95693|chr3B|31255957|31256071|TAACTAC|24|F4188 18\n",
      "MITE_T_126060|chr5A|658491604|658492196|AT|10|F5886 18\n",
      "MITE_T_11094|chr7B|505474754|505475095|AG|26|F584 18\n",
      "MITE_T_79068|chr5D|23153848|23153998|TA|41|F3401 18\n",
      "MITE_T_6182|chr7B|589393068|589393448|AGCT|163|F368 18\n",
      "MITE_T_55598|chr5D|263070630|263070841|AGCA|20|F2198 17\n",
      "MITE_T_127549|chr2B|528281019|528281560|CATG|22|F5959 17\n",
      "MITE_T_25700|chr5D|189140232|189140526|TGTAGATGG|21|F1027 17\n",
      "MITE_T_388|chr7B|213900411|213900880|GC|34|F39 17\n",
      "MITE_T_77019|chr2A|30304905|30305063|CTAG|40|F3262 17\n",
      "MITE_T_27635|chr1B|359071987|359072274|AT|25|F1100 17\n",
      "MITE_T_73525|chr4D|44750657|44750820|TA|52|F3010 17\n",
      "MITE_T_62046|chr6A|591331881|591332065|TA|21|F2453 17\n",
      "MITE_T_45694|chr3A|212740222|212740463|GG|24|F1895 17\n",
      "MITE_T_70532|chr3B|587920666|587920831|GC|10|F2885 17\n",
      "MITE_T_19479|chr2D|154390211|154390523|CG|28|F819 17\n",
      "MITE_T_127466|chr3D|581866662|581867209|CTCGTTGC|13|F5950 17\n",
      "MITE_T_14151|chr3B|24919274|24919604|GC|22|F666 17\n",
      "MITE_T_81344|chr1B|587986728|587986866|CG|33|F3500 17\n",
      "MITE_T_8105|chr5D|53995714|53996080|TA|18|F461 17\n",
      "MITE_T_4640|chr2B|406089736|406090133|TT|405|F280 17\n",
      "MITE_T_2483|chr3A|80389973|80390738|ACT|33|F163 17\n",
      "MITE_T_80546|chr3B|706180659|706180804|TA|24|F3441 17\n",
      "MITE_T_20979|chr4A|169691307|169691616|AATT|35|F859 17\n",
      "MITE_T_126364|chr4D|242743675|242744254|GC|26|F5899 16\n",
      "MITE_T_13754|chr6D|20244099|20244430|CATATG|24|F650 16\n",
      "MITE_T_42497|chr3B|764843233|764843484|GC|32|F1791 16\n",
      "MITE_T_24812|chr1D|471007396|471007693|TAA|31|F992 16\n",
      "MITE_T_73627|chr6B|705319507|705319670|AG|22|F3015 16\n",
      "MITE_T_53646|chr4B|156534195|156534415|AT|67|F2112 16\n",
      "MITE_T_125680|chr5A|680149482|680150264|AT|205|F5874 16\n",
      "MITE_T_7024|chr3B|29711105|29711479|GGT|10|F404 16\n",
      "MITE_T_42956|chr4D|503863426|503863673|GT|20|F1828 16\n",
      "MITE_T_78357|chr4B|31525674|31525827|ATATCGGC|16|F3359 16\n",
      "MITE_T_127575|chr4B|540665445|540666221|TT|24|F5961 16\n",
      "MITE_T_77779|chr1A|234809908|234810064|CTTGCAT|13|F3318 16\n",
      "MITE_T_11437|chr6D|122732706|122733045|ACT|20|F591 16\n",
      "MITE_T_1196|chr7D|580653708|580654154|AT|20|F95 16\n",
      "MITE_T_122447|chr6A|104118341|104118404|TA|69|F5723 16\n",
      "MITE_T_8880|chr2A|98156156|98156515|TA|34|F499 16\n",
      "MITE_T_82749|chr7D|309743986|309744118|TA|17|F3581 15\n",
      "MITE_T_105372|chr2A|186443800|186443896|TT|97|F4725 15\n",
      "MITE_T_78418|chr7B|682030686|682030838|AT|51|F3368 15\n",
      "MITE_T_49838|chr1B|98129246|98129485|TA|253|F1953 15\n",
      "MITE_T_39355|chr4B|505207789|505208050|AC|10|F1636 15\n",
      "MITE_T_345|chr1D|138270753|138271223|AAC|45|F36 15\n",
      "MITE_T_38114|chr4A|661303178|661303441|TA|42|F1574 15\n",
      "MITE_T_62483|chr7B|652147289|652147471|TTT|47|F2491 15\n",
      "MITE_T_22863|chr1A|84177051|84177352|GC|45|F941 15\n",
      "MITE_T_51633|chr1A|571283315|571283549|TA|18|F2028 15\n",
      "MITE_T_8545|chr7A|6304196|6304558|GCGGCAAT|13|F478 15\n",
      "MITE_T_42734|chr7A|270195396|270196195|ATTTT|153|F1811 15\n",
      "MITE_T_126280|chr1B|429592856|429593652|AT|12|F5894 15\n",
      "MITE_T_122255|chr1D|124343058|124343129|AT|78|F5689 15\n",
      "MITE_T_8689|chr5B|71343513|71343874|TA|10|F486 15\n",
      "MITE_T_106977|chr6B|704410258|704410353|TA|101|F4827 15\n",
      "MITE_T_127005|chr6B|3648284|3648844|CATG|20|F5926 15\n",
      "MITE_T_72448|chr6B|43093381|43094110|CTAG|18|F2986 15\n",
      "MITE_T_45610|chr1B|4460036|4460278|TA|251|F1890 15\n",
      "MITE_T_59235|chr4D|500428464|500428661|TTGAGT|18|F2289 15\n",
      "MITE_T_42655|chr3D|570378074|570378324|TATA|270|F1801 15\n",
      "MITE_T_49741|chr2B|495901907|495902146|AT|19|F1944 15\n",
      "MITE_T_708|chr7A|47443256|47444056|CGTG|19|F61 15\n",
      "MITE_T_80455|chr7D|353937731|353937878|TA|23|F3431 15\n",
      "MITE_T_61463|chr4B|289510959|289511145|GCTCC|22|F2414 15\n",
      "MITE_T_125340|chr5B|519645016|519645631|TA|13|F5863 15\n"
     ]
    },
    {
     "name": "stdout",
     "output_type": "stream",
     "text": [
      "MITE_T_1909|chr1B|561694221|561694654|TA|40|F137 15\n",
      "MITE_T_121393|chr6B|503536324|503536405|TA|85|F5587 14\n",
      "MITE_T_63396|chr5A|255491915|255492094|AT|38|F2538 14\n",
      "MITE_T_2153|chr1A|399420041|399420470|GTGGGACCCT|439|F149 14\n",
      "MITE_T_53320|chr6D|248582279|248583018|GAG|26|F2093 14\n",
      "MITE_T_62195|chr7A|670351161|670351344|CTATGGAT|13|F2467 14\n",
      "MITE_T_125600|chr3A|740092149|740092756|GC|35|F5870 14\n",
      "MITE_T_60824|chr1D|48024398|48024587|ACACAA|17|F2381 14\n",
      "MITE_T_61968|chr4A|730496825|730497009|TGCA|21|F2447 14\n",
      "MITE_T_14311|chr5B|302342708|302343037|TA|35|F671 14\n",
      "MITE_T_75082|chr1B|615414308|615414469|GGCC|21|F3098 14\n",
      "MITE_T_50629|chr3A|308789505|308789742|GC|17|F1977 14\n",
      "MITE_T_21423|chr5A|19489453|19489760|CAAATTTG|10|F870 14\n",
      "MITE_T_59053|chr3B|697172340|697172538|TG|25|F2275 14\n",
      "MITE_T_97033|chr2A|20794993|20795105|CG|13|F4280 14\n",
      "MITE_T_34247|chr2A|229985701|229985974|TA|19|F1398 14\n",
      "MITE_T_61930|chr7A|683981450|683981635|GT|17|F2443 14\n",
      "MITE_T_7398|chr5D|439405461|439405834|AG|386|F417 14\n",
      "MITE_T_75714|chr5B|685252352|685252513|GGG|24|F3148 14\n",
      "MITE_T_80335|chr5D|94027697|94027845|CA|17|F3426 14\n",
      "MITE_T_54224|chr4D|394301861|394302081|AT|76|F2118 14\n",
      "MITE_T_18902|chr1B|399231250|399232002|TA|23|F797 14\n",
      "MITE_T_55321|chr3D|172359215|172359428|CA|19|F2191 14\n",
      "MITE_T_123561|chr7B|493199307|493199990|ATGCCA|14|F5790 14\n",
      "MITE_T_54241|chr2D|640898879|640899099|AT|68|F2119 14\n",
      "MITE_T_59717|chr3A|734021327|734021520|CG|28|F2324 14\n",
      "MITE_T_66253|chr6B|433678763|433678934|TA|18|F2681 14\n",
      "MITE_T_21658|chr1B|667612817|667613123|TA|33|F883 14\n",
      "MITE_T_12154|chr3D|8886794|8887588|TATT|17|F608 14\n",
      "MITE_T_9740|chr1B|69829724|69830071|AGT|37|F549 14\n",
      "MITE_T_22909|chr6B|225313561|225313861|GGGAGAT|61|F947 14\n",
      "MITE_T_3142|chr5A|662323993|662324409|GC|170|F205 14\n",
      "MITE_T_55782|chr1A|497763035|497763246|TG|24|F2201 13\n",
      "MITE_T_30978|chr3D|409128377|409129124|AT|13|F1248 13\n",
      "MITE_T_1745|chr4D|346352262|346352697|TA|11|F125 13\n",
      "MITE_T_3431|chr6D|229660118|229660527|AGG|26|F227 13\n",
      "MITE_T_122786|chr7B|40078983|40079038|TT|10|F5754 13\n",
      "MITE_T_127703|chr5A|616921879|616922654|TTCAT|146|F5972 13\n",
      "MITE_T_60041|chr2B|288941035|288941226|AGTA|18|F2350 13\n",
      "MITE_T_907|chr5B|555118617|555119066|AT|17|F86 13\n",
      "MITE_T_80598|chr3B|20341911|20342055|TCT|21|F3447 13\n",
      "MITE_T_50950|chr5A|533346260|533346496|TA|43|F2002 13\n",
      "MITE_T_28667|chr3B|761834687|761834971|TCAG|21|F1154 13\n",
      "MITE_T_104850|chr2B|176296669|176297382|TGCA|25|F4688 13\n",
      "MITE_T_15879|chr3A|540695302|540695630|GC|20|F680 13\n",
      "MITE_T_127090|chr1D|134999710|135000264|GG|27|F5935 13\n",
      "MITE_T_3320|chr7A|647918461|647918875|CG|36|F216 13\n",
      "MITE_T_62078|chr7B|144745144|144745327|GC|36|F2456 13\n",
      "MITE_T_104663|chr2B|17078225|17078322|AT|14|F4675 13\n",
      "MITE_T_9479|chr7D|25821798|25822146|TA|16|F542 13\n",
      "MITE_T_80430|chr3A|141963091|141963238|AGT|16|F3429 13\n",
      "MITE_T_104557|chr5B|34252085|34252183|ATATATAT|116|F4665 13\n",
      "MITE_T_119575|chr1B|159205724|159205805|TA|85|F5444 13\n",
      "MITE_T_59374|chr3A|562342269|562342465|GT|18|F2296 13\n",
      "MITE_T_111194|chr3B|654652704|654652793|TA|96|F5069 13\n",
      "MITE_T_59137|chr5A|658491037|658491235|TCA|204|F2284 13\n",
      "MITE_T_58821|chr2B|527581359|527581559|CGTA|17|F2254 13\n",
      "MITE_T_1921|chr7D|605183266|605183699|TGGCCA|458|F139 12\n",
      "MITE_T_62286|chr7A|308301544|308301726|CAGA|16|F2476 12\n",
      "MITE_T_58656|chr5D|198190781|198190983|CCGGTT|18|F2248 12\n",
      "MITE_T_53438|chr3B|571313531|571313753|CTA|78|F2100 12\n",
      "MITE_T_106|chr4B|18461729|18462209|CA|24|F16 12\n",
      "MITE_T_43099|chr5D|342945791|342946037|GGAGGGGAGG|251|F1835 12\n",
      "MITE_T_2770|chr2B|455795158|455795579|AT|37|F184 12\n",
      "MITE_T_69697|chr7B|733044841|733045571|CATG|69|F2841 12\n",
      "MITE_T_121698|chr5B|642230869|642230950|TA|85|F5614 12\n",
      "MITE_T_116252|chr3D|581934415|581934499|TA|90|F5298 12\n",
      "MITE_T_31470|chr7D|95056114|95056390|TAA|17|F1261 12\n",
      "MITE_T_55792|chr4B|638791272|638791483|TGCT|20|F2202 12\n",
      "MITE_T_42855|chr6A|438580932|438581179|AG|19|F1825 12\n",
      "MITE_T_127101|chr5B|544803656|544804210|CAGG|16|F5936 12\n",
      "MITE_T_58597|chr1B|67529695|67529898|TA|22|F2242 12\n",
      "MITE_T_64813|chr5A|689884240|689884414|TG|19|F2621 12\n",
      "MITE_T_16419|chr5D|542620150|542620477|GC|10|F692 12\n",
      "MITE_T_10732|chr7B|191286864|191287209|TTAGAG|13|F559 12\n",
      "MITE_T_40873|chr2A|742770065|742770323|ACC|11|F1715 12\n",
      "MITE_T_8323|chr6B|378176718|378177082|TTA|19|F470 12\n",
      "MITE_T_65471|chr1D|13687110|13687282|GC|22|F2646 12\n",
      "MITE_T_91166|chr5D|18193748|18193870|TA|134|F3955 12\n",
      "MITE_T_55447|chr3A|75962029|75962241|AT|33|F2195 12\n",
      "MITE_T_117192|chr7A|41436932|41437015|AT|87|F5336 12\n",
      "MITE_T_2903|chr6B|357275089|357275508|TAA|46|F193 12\n",
      "MITE_T_64182|chr5D|433183929|433184106|AT|27|F2571 12\n",
      "MITE_T_1507|chr4A|634399025|634399462|CC|55|F116 12\n",
      "MITE_T_53205|chr4A|739269951|739270174|AT|230|F2089 12\n",
      "MITE_T_8137|chr3D|155561289|155561655|GC|21|F463 12\n",
      "MITE_T_52698|chr1D|245217304|245217533|GT|234|F2050 12\n",
      "MITE_T_122132|chr7B|704247222|704247296|AT|78|F5671 12\n",
      "MITE_T_7994|chr3B|539240108|539240475|TAA|16|F456 12\n",
      "MITE_T_2928|chr5D|13633471|13633889|AT|10|F195 12\n",
      "MITE_T_25319|chr2A|631201655|631201951|TA|309|F1010 12\n",
      "MITE_T_76793|chr2D|7216150|7216309|TCAGGT|14|F3237 12\n",
      "MITE_T_123068|chr2A|505599200|505599896|TATTT|195|F5768 11\n",
      "MITE_T_126814|chr6B|183928147|183928714|TA|34|F5917 11\n",
      "MITE_T_81763|chr2A|28708021|28708157|AGT|19|F3526 11\n",
      "MITE_T_19252|chr6B|383401142|383401455|TA|29|F810 11\n",
      "MITE_T_9212|chr1D|347440794|347441147|AA|362|F523 11\n",
      "MITE_T_29911|chr2A|32367863|32368143|TATAAAT|87|F1200 11\n",
      "MITE_T_62254|chr3A|552484174|552484356|ATAT|22|F2472 11\n",
      "MITE_T_1821|chr7B|700280561|700280995|GC|452|F132 11\n",
      "MITE_T_39442|chr2B|772805060|772805321|TA|270|F1646 11\n",
      "MITE_T_80609|chr2B|735518005|735518149|AT|36|F3449 11\n",
      "MITE_T_22995|chr2D|35245549|35245849|AT|13|F953 11\n",
      "MITE_T_53314|chr4B|473905507|473905730|GA|14|F2092 11\n",
      "MITE_T_124303|chr5A|475654593|475655247|AAA|14|F5824 11\n",
      "MITE_T_22623|chr5D|428835041|428835343|GCAGCGCAT|81|F930 11\n",
      "MITE_T_5761|chr1D|24095076|24095459|AT|398|F348 11\n",
      "MITE_T_90102|chr1D|35756864|35756987|AATT|138|F3888 11\n",
      "MITE_T_29773|chr7A|407818382|407818663|TA|293|F1189 11\n",
      "MITE_T_954|chr1D|349474310|349474757|TT|12|F89 11\n",
      "MITE_T_22637|chr2B|607947534|607947836|TA|31|F932 11\n",
      "MITE_T_19273|chr3D|30415172|30415485|TCA|50|F811 11\n",
      "MITE_T_59924|chr7B|382161099|382161291|GTC|27|F2336 11\n",
      "MITE_T_69675|chr5A|586165615|586165782|AGCAAA|22|F2839 11\n",
      "MITE_T_81874|chr5D|382495070|382495206|AT|53|F3533 11\n",
      "MITE_T_4948|chr6A|563201591|563201983|AT|32|F297 11\n",
      "MITE_T_41627|chr3B|687075681|687075936|TA|64|F1766 11\n",
      "MITE_T_5445|chr7D|474171645|474172031|TA|17|F330 11\n",
      "MITE_T_127627|chr4A|732299843|732300375|GCCATGGC|166|F5967 11\n",
      "MITE_T_61554|chr3D|580410591|580410777|GTAC|22|F2419 11\n",
      "MITE_T_122432|chr3D|175543128|175543191|TA|68|F5721 11\n",
      "MITE_T_76|chr7D|305126756|305127239|TAA|31|F12 11\n",
      "MITE_T_40853|chr6A|589344834|589345092|TACTA|36|F1713 11\n",
      "MITE_T_77967|chr5A|560218661|560218816|ATAT|13|F3332 11\n",
      "MITE_T_7249|chr2D|213492631|213493390|CG|15|F412 11\n",
      "MITE_T_1606|chr3D|325986602|325987038|AGAGGCA|81|F122 11\n",
      "MITE_T_68703|chr7B|4396179|4396347|AT|17|F2781 11\n",
      "MITE_T_80218|chr2B|754574284|754574433|CTAAG|20|F3413 11\n",
      "MITE_T_120237|chr2D|122866115|122866196|TA|85|F5485 11\n",
      "MITE_T_363|chr6B|150660545|150661014|AT|26|F37 11\n",
      "MITE_T_9407|chr7D|621777513|621778270|AA|41|F536 11\n",
      "MITE_T_127224|chr3A|11077866|11078416|AG|16|F5943 11\n",
      "MITE_T_118268|chr5B|712959901|712959983|TA|88|F5416 11\n",
      "MITE_T_127179|chr1B|7767379|7767931|TG|16|F5940 11\n",
      "MITE_T_4513|chr2A|403427638|403428037|TA|15|F268 10\n",
      "MITE_T_58562|chr4D|207595597|207595800|TTA|71|F2239 10\n",
      "MITE_T_89589|chr3B|229819787|229819910|TA|130|F3852 10\n",
      "MITE_T_43113|chr3B|781342579|781342825|TA|258|F1837 10\n",
      "MITE_T_6223|chr4B|57143112|57143492|CT|392|F370 10\n",
      "MITE_T_22054|chr5D|322428029|322428334|ACT|33|F900 10\n",
      "MITE_T_127215|chr6A|458142085|458142636|CTCG|14|F5941 10\n",
      "MITE_T_30954|chr3D|498840963|498841240|AT|28|F1245 10\n",
      "MITE_T_75930|chr3B|588857335|588857495|GACA|15|F3162 10\n",
      "MITE_T_125086|chr7A|735788140|735788766|TCGA|35|F5848 10\n",
      "MITE_T_40499|chr5A|680716346|680716605|TA|267|F1696 10\n",
      "MITE_T_4889|chr5D|434358735|434359128|AT|27|F293 10\n",
      "MITE_T_60198|chr7B|750337439|750337629|CCA|21|F2366 10\n",
      "MITE_T_62570|chr6D|126435119|126435300|TT|24|F2500 10\n",
      "MITE_T_54800|chr1D|476562038|476562254|TGAG|14|F2157 10\n",
      "MITE_T_3908|chr5A|470915425|470915830|TA|23|F246 10\n",
      "MITE_T_80671|chr4B|391552027|391552170|AT|33|F3455 10\n",
      "MITE_T_66166|chr2A|711827987|711828158|GTGCCA|14|F2674 10\n",
      "MITE_T_117763|chr7A|202000741|202000823|AT|86|F5375 10\n",
      "MITE_T_123285|chr6D|439406635|439407325|ATCCTACC|11|F5779 10\n",
      "MITE_T_794|chr2A|27633422|27633877|CAAA|37|F73 10\n",
      "MITE_T_22560|chr7B|86332724|86333027|AT|15|F926 10\n",
      "MITE_T_933|chr6B|675209534|675209982|AT|46|F88 10\n",
      "MITE_T_85021|chr3A|744198059|744198188|TAA|15|F3655 10\n",
      "MITE_T_6403|chr2A|74293300|74293679|TTC|387|F375 10\n",
      "MITE_T_52758|chr3B|367243087|367243315|TT|235|F2058 10\n",
      "MITE_T_78340|chr3A|621233893|621234046|GC|14|F3357 10\n",
      "MITE_T_54458|chr1A|583181041|583181259|AT|12|F2136 10\n",
      "MITE_T_59610|chr1D|28065167|28065361|TACG|16|F2312 10\n",
      "MITE_T_64755|chr4A|497810818|497810992|TA|41|F2614 10\n",
      "MITE_T_75862|chr1B|133201058|133201218|TTA|15|F3157 10\n",
      "MITE_T_67487|chr1D|440423264|440423433|GGCGTGTG|16|F2726 10\n",
      "MITE_T_91888|chr5B|603453695|603453815|AT|46|F4010 10\n",
      "MITE_T_51652|chr3D|573605512|573605745|GTA|13|F2030 10\n",
      "MITE_T_66151|chr7A|26740837|26741008|TA|41|F2673 10\n",
      "MITE_T_52642|chr5D|308459461|308459692|CAA|56|F2046 10\n",
      "MITE_T_332|chr1A|557861785|557862256|TAA|21|F35 10\n"
     ]
    },
    {
     "name": "stdout",
     "output_type": "stream",
     "text": [
      "MITE_T_17631|chr3D|571057299|571057623|GGCT|17|F722 10\n",
      "MITE_T_79075|chr5B|271045650|271045800|AT|13|F3402 10\n",
      "MITE_T_128441|chr5A|46248854|46249654|ACCGAAAG|19|F6013 10\n",
      "MITE_T_67181|chr2A|26840158|26840328|CC|20|F2715 10\n",
      "MITE_T_69109|chr2B|357913164|357913331|GTC|19|F2802 10\n",
      "MITE_T_59256|chr5A|644023080|644023277|AA|24|F2290 10\n",
      "MITE_T_50804|chr6B|717874876|717875113|GC|43|F1991 10\n",
      "MITE_T_36316|chr4A|702169872|702170665|TATTGACAC|346|F1496 10\n",
      "MITE_T_1330|chr1B|28520384|28520826|TAA|14|F102 10\n",
      "MITE_T_127927|chr7A|158344005|158344778|CG|30|F5990 10\n",
      "MITE_T_1814|chr7A|670858267|670858701|CTCGTAC|445|F131 10\n",
      "MITE_T_80526|chr6D|18958673|18958818|ATAT|37|F3438 10\n",
      "MITE_T_67173|chr2B|57732002|57732172|TA|43|F2713 10\n",
      "MITE_T_2596|chr2B|665444281|665444705|ACGT|70|F168 10\n",
      "MITE_T_66278|chr5B|477637017|477637188|TA|37|F2684 10\n",
      "MITE_T_5683|chr3B|816618890|816619274|TA|35|F342 9\n",
      "MITE_T_238|chr2B|51174964|51175442|TGCA|21|F23 9\n",
      "MITE_T_49843|chr4A|425885577|425886319|CGTGGGCC|17|F1954 9\n",
      "MITE_T_52635|chr7B|20093675|20093906|TA|67|F2045 9\n",
      "MITE_T_124495|chr2A|723105995|723106638|TTG|15|F5837 9\n",
      "MITE_T_64253|chr3B|684356317|684356494|TC|16|F2576 9\n",
      "MITE_T_123794|chr6D|211700447|211701116|TG|45|F5810 9\n",
      "MITE_T_80575|chr5D|72498893|72499038|TTA|13|F3443 9\n",
      "MITE_T_70354|chr5D|462454626|462454792|GC|42|F2874 9\n",
      "MITE_T_78378|chr6B|675551246|675551399|CT|26|F3363 9\n",
      "MITE_T_125260|chr3A|441193831|441194448|CTTGCGCTT|202|F5858 9\n",
      "MITE_T_127737|chr3A|503049580|503050106|CA|26|F5974 9\n",
      "MITE_T_6248|chr1B|606586090|606586470|TA|13|F371 9\n",
      "MITE_T_80261|chr1B|246750415|246750563|AGT|12|F3416 9\n",
      "MITE_T_91500|chr5A|368108619|368108740|GCT|22|F3981 9\n",
      "MITE_T_127822|chr4B|507387172|507387691|AGCACGTA|11|F5984 9\n",
      "MITE_T_45377|chr5A|98037126|98037369|AT|250|F1882 9\n",
      "MITE_T_75388|chr7B|449603695|449603856|TA|13|F3115 9\n",
      "MITE_T_1473|chr2B|41382924|41383364|AT|46|F111 9\n",
      "MITE_T_71477|chr3B|804133152|804133316|CTCCTGGT|16|F2944 9\n",
      "MITE_T_4126|chr4A|41649180|41649582|TA|43|F258 9\n",
      "MITE_T_117779|chr3A|38541528|38541610|TA|86|F5377 9\n",
      "MITE_T_123520|chr1A|549305155|549305943|AT|26|F5788 9\n",
      "MITE_T_68083|chr6B|626486443|626486612|AGT|20|F2753 9\n",
      "MITE_T_3471|chr4A|501940220|501940629|TATAATAATA|48|F229 9\n",
      "MITE_T_76976|chr5A|214913577|214913735|GC|164|F3258 9\n",
      "MITE_T_126712|chr2D|576959680|576960250|CTCTTGAT|13|F5914 9\n",
      "MITE_T_61710|chr3D|14038157|14038342|GC|30|F2432 9\n",
      "MITE_T_18416|chr4B|82604846|82605165|TTTCTGT|34|F761 9\n",
      "MITE_T_9286|chr1B|648692619|648692971|GC|12|F525 9\n",
      "MITE_T_59422|chr4D|36483226|36483422|GC|20|F2298 9\n",
      "MITE_T_128264|chr2B|180054481|180055253|CTGCTT|18|F6007 9\n",
      "MITE_T_45080|chr4D|214944571|214944814|TA|73|F1870 9\n",
      "MITE_T_100589|chr4B|399946940|399947046|AT|19|F4418 9\n",
      "MITE_T_69323|chr3A|727293775|727293942|TA|28|F2820 9\n",
      "MITE_T_67576|chr7A|316240269|316240438|AT|43|F2736 9\n",
      "MITE_T_63068|chr3B|154762648|154762828|CGAA|16|F2525 9\n",
      "MITE_T_72280|chr6B|190375496|190375659|AT|20|F2979 9\n",
      "MITE_T_444|chr7B|746877987|746878454|AAG|16|F45 9\n",
      "MITE_T_58484|chr2A|720398634|720398837|ATG|21|F2237 9\n",
      "MITE_T_123626|chr2A|109315682|109316363|CA|24|F5794 9\n",
      "MITE_T_123538|chr5A|602274145|602274943|CC|376|F5789 9\n",
      "MITE_T_81210|chr4A|471920447|471920586|TAA|13|F3490 9\n",
      "MITE_T_107297|chr5B|196466900|196466994|TA|103|F4841 9\n",
      "MITE_T_66|chr6B|288042651|288043134|TTA|11|F10 9\n",
      "MITE_T_124366|chr3A|163804814|163805600|TACG|15|F5831 9\n",
      "MITE_T_77575|chr2D|461804170|461804327|TA|47|F3308 9\n",
      "MITE_T_8660|chr5A|367334518|367334879|AT|27|F484 9\n",
      "MITE_T_69988|chr3B|758243026|758243192|ACTGGAAC|11|F2860 9\n",
      "MITE_T_913|chr7B|103085758|103086207|AA|466|F87 9\n",
      "MITE_T_64003|chr7D|598266535|598266713|CCCAAGCA|36|F2558 9\n",
      "MITE_T_18668|chr7D|608110786|608111103|TAA|28|F783 9\n",
      "MITE_T_5054|chr3D|418215957|418216347|GC|28|F307 9\n",
      "MITE_T_4713|chr3B|721650887|721651283|TA|18|F285 9\n",
      "MITE_T_56420|chr6A|362231269|362232006|TTA|11|F2204 9\n",
      "MITE_T_26174|chr7A|115741853|115742145|TAA|49|F1053 8\n",
      "MITE_T_58854|chr5B|396883865|396884065|AT|31|F2256 8\n",
      "MITE_T_16886|chr6A|435563697|435564022|TA|46|F711 8\n",
      "MITE_T_54340|chr2B|39160941|39161160|AT|63|F2128 8\n",
      "MITE_T_122793|chr2A|733925314|733925369|GA|56|F5755 8\n",
      "MITE_T_22789|chr2A|11647216|11647517|AT|313|F936 8\n",
      "MITE_T_5071|chr1D|29992638|29993028|AACC|16|F308 8\n",
      "MITE_T_743|chr6B|581290877|581291333|AGGGTGG|151|F66 8\n",
      "MITE_T_118259|chr5A|709731051|709731133|AT|86|F5414 8\n",
      "MITE_T_53032|chr2A|684405718|684405943|AT|43|F2070 8\n",
      "MITE_T_30613|chr7A|626390897|626391176|TTGGC|62|F1223 8\n",
      "MITE_T_77770|chr7B|13842877|13843033|ATTTGATG|11|F3316 8\n",
      "MITE_T_13826|chr4B|494689937|494690268|CT|26|F654 8\n",
      "MITE_T_7630|chr6D|419731813|419732182|GTCACACT|15|F436 8\n",
      "MITE_T_77823|chr3B|830026830|830026985|GC|39|F3323 8\n",
      "MITE_T_2913|chr6A|608969693|608970112|GCGAC|438|F194 8\n",
      "MITE_T_81355|chr1B|119126414|119126552|AAGA|18|F3502 8\n",
      "MITE_T_122693|chr5A|576587622|576588324|CATG|10|F5742 8\n",
      "MITE_T_52362|chr2B|26513150|26513382|TTA|39|F2039 8\n",
      "MITE_T_62389|chr6D|322588827|322589009|GGA|38|F2478 8\n",
      "MITE_T_5377|chr5D|409491591|409491978|TAA|16|F325 8\n",
      "MITE_T_69286|chr5B|400924585|400924752|TA|14|F2816 8\n",
      "MITE_T_125191|chr4D|381901514|381902297|GC|28|F5856 8\n",
      "MITE_T_3766|chr6B|20079768|20080175|TTA|17|F236 8\n",
      "MITE_T_219|chr7A|722382690|722383169|GC|166|F21 8\n",
      "MITE_T_17860|chr3D|227247460|227247782|GC|10|F735 8\n",
      "MITE_T_80846|chr2A|350732332|350732474|TTAA|155|F3464 8\n",
      "MITE_T_123093|chr2A|290620259|290620954|TA|13|F5769 8\n",
      "MITE_T_42769|chr2B|65299947|65300690|CATG|273|F1815 8\n",
      "MITE_T_64598|chr1D|307447976|307448151|AT|23|F2603 8\n",
      "MITE_T_67544|chr1B|16262281|16262450|AGT|11|F2731 8\n",
      "MITE_T_78317|chr7D|102303007|102303160|GC|16|F3353 8\n",
      "MITE_T_1486|chr7B|720817863|720818303|TA|13|F113 8\n",
      "MITE_T_62162|chr2D|436161581|436161764|AAT|39|F2465 8\n",
      "MITE_T_127768|chr7D|95569651|95570174|TT|532|F5978 8\n",
      "MITE_T_1900|chr3A|735405311|735405744|TTA|62|F136 8\n",
      "MITE_T_67433|chr7A|694116003|694116173|AT|36|F2722 8\n",
      "MITE_T_107837|chr4B|6954924|6955018|AT|31|F4865 8\n",
      "MITE_T_514|chr2D|638881086|638881549|GTGCTGAG|22|F49 8\n",
      "MITE_T_123298|chr4A|606408712|606409400|CTTTTAGC|13|F5781 8\n",
      "MITE_T_21345|chr5D|55587099|55587407|TT|100|F866 8\n",
      "MITE_T_1340|chr7B|38612305|38612747|AT|19|F103 8\n",
      "MITE_T_123214|chr6B|645522142|645522836|AATT|14|F5775 8\n",
      "MITE_T_2661|chr5D|127932203|127932967|ACCACGCGC|18|F177 8\n",
      "MITE_T_76003|chr2A|59326426|59326586|TTA|17|F3172 8\n",
      "MITE_T_26237|chr7B|244533126|244533418|AAA|70|F1056 8\n",
      "MITE_T_80954|chr1B|450851003|450851144|GC|21|F3471 8\n",
      "MITE_T_63983|chr1B|662721014|662721746|ATT|47|F2555 8\n",
      "MITE_T_6214|chr7A|613024167|613024547|TA|39|F369 8\n",
      "MITE_T_127950|chr7B|672572276|672572786|TC|34|F5993 8\n",
      "MITE_T_39629|chr1A|101334048|101334308|AAA|30|F1659 8\n",
      "MITE_T_21361|chr4A|699975310|699975618|TTA|27|F867 8\n",
      "MITE_T_74403|chr6B|687020581|687020743|CCTTCTAA|16|F3055 8\n",
      "MITE_T_15885|chr6D|36066684|36067012|TA|45|F681 8\n",
      "MITE_T_5996|chr7D|621192393|621192775|CAT|30|F357 8\n",
      "MITE_T_59361|chr2D|576972397|576973132|GC|11|F2294 8\n",
      "MITE_T_10851|chr2A|6326890|6327233|TA|34|F571 7\n",
      "MITE_T_62209|chr2B|549223415|549223598|TATATA|33|F2469 7\n",
      "MITE_T_43538|chr5A|22729190|22729434|TA|33|F1851 7\n",
      "MITE_T_58872|chr6A|493525347|493525547|AT|28|F2258 7\n",
      "MITE_T_127525|chr4A|601138687|601139231|TC|16|F5955 7\n",
      "MITE_T_59976|chr3A|731029643|731029835|CC|19|F2342 7\n",
      "MITE_T_127655|chr3D|518557567|518558097|AAA|29|F5969 7\n",
      "MITE_T_81841|chr7D|366728842|366728978|TA|22|F3531 7\n",
      "MITE_T_127755|chr7B|611668481|611669006|AT|27|F5976 7\n",
      "MITE_T_122028|chr3B|726772858|726772935|CA|78|F5658 7\n",
      "MITE_T_29789|chr3B|661161550|661161831|GC|11|F1191 7\n",
      "MITE_T_676|chr6A|430745028|430745487|TAA|19|F57 7\n",
      "MITE_T_77597|chr1B|662832432|662832589|GC|10|F3311 7\n",
      "MITE_T_64773|chr3B|818161580|818161754|CATG|21|F2615 7\n",
      "MITE_T_4601|chr2B|52912395|52912792|TTA|14|F276 7\n",
      "MITE_T_18426|chr7D|123461338|123462137|CTTTG|25|F762 7\n",
      "MITE_T_76440|chr7A|110992656|110992815|GGACAG|14|F3212 7\n",
      "MITE_T_126426|chr6B|141736106|141736885|TTCTCTCC|28|F5904 7\n",
      "MITE_T_61476|chr6B|23472800|23472986|ACAC|13|F2415 7\n",
      "MITE_T_91256|chr2A|500710327|500710449|GC|26|F3957 7\n",
      "MITE_T_28|chr6D|178646158|178646642|TG|486|F5 7\n",
      "MITE_T_85540|chr4D|42332907|42333706|TATG|28|F3675 7\n",
      "MITE_T_67168|chr5B|41989976|41990146|TTA|28|F2712 7\n",
      "MITE_T_78058|chr3D|615079841|615079995|GC|38|F3337 7\n",
      "MITE_T_125637|chr3B|708571628|708572235|TA|11|F5871 7\n",
      "MITE_T_22665|chr1D|478453633|478453934|AT|18|F934 7\n",
      "MITE_T_7551|chr4B|89050532|89050902|AG|29|F429 7\n",
      "MITE_T_43521|chr3B|433680581|433681324|ACTA|22|F1849 7\n",
      "MITE_T_10752|chr6A|397484238|397484583|ACTCAA|13|F562 7\n"
     ]
    },
    {
     "name": "stdout",
     "output_type": "stream",
     "text": [
      "MITE_T_122174|chr2A|49850925|49850996|TA|75|F5679 7\n",
      "MITE_T_123824|chr4B|637331804|637332471|AT|27|F5812 7\n",
      "MITE_T_27696|chr7D|421801021|421801308|TAA|13|F1103 7\n",
      "MITE_T_73717|chr7A|158373239|158373401|ATCTAC|15|F3027 7\n",
      "MITE_T_127832|chr6A|453755920|453756436|AT|28|F5986 7\n",
      "MITE_T_124342|chr1B|678238124|678238775|AGTTC|48|F5827 7\n",
      "MITE_T_73779|chr2A|504252521|504252683|TATA|24|F3032 7\n",
      "MITE_T_14041|chr7A|104030348|104031147|CAAAG|14|F662 7\n",
      "MITE_T_84252|chr5B|396461144|396461274|TA|30|F3624 7\n",
      "MITE_T_70|chr4B|5553363|5554134|CA|13|F11 7\n",
      "MITE_T_39473|chr2D|371919146|371919406|TA|98|F1650 7\n",
      "MITE_T_124271|chr5A|10925535|10926189|TGTATGTA|20|F5823 7\n",
      "MITE_T_36091|chr3B|72474691|72474958|TT|278|F1489 7\n",
      "MITE_T_1584|chr5B|502014879|502015316|GAC|46|F119 7\n",
      "MITE_T_115796|chr2A|285632926|285633011|AC|85|F5264 7\n",
      "MITE_T_41860|chr5A|631061410|631061664|GA|34|F1774 7\n",
      "MITE_T_69822|chr7B|706187633|706187800|AT|37|F2847 7\n",
      "MITE_T_7802|chr1B|7948015|7948383|TA|28|F445 7\n",
      "MITE_T_102800|chr7A|628642550|628642653|TA|33|F4565 7\n",
      "MITE_T_94403|chr3B|624544373|624545092|TCACAC|12|F4093 7\n",
      "MITE_T_36372|chr2D|76126969|76127236|CT|83|F1501 7\n",
      "MITE_T_75554|chr5D|505901344|505901505|TA|36|F3134 7\n",
      "MITE_T_25017|chr2A|724372222|724372518|TTA|30|F1003 7\n",
      "MITE_T_8520|chr3B|258718628|258718991|TG|20|F475 7\n",
      "MITE_T_86041|chr3A|10212757|10212885|GC|15|F3699 7\n",
      "MITE_T_68715|chr5A|520091496|520091664|AT|15|F2783 7\n",
      "MITE_T_121997|chr7A|663454928|663455636|GCCCTAGA|32|F5654 7\n",
      "MITE_T_80227|chr6D|77621570|77621719|ACT|16|F3414 7\n",
      "MITE_T_5028|chr3D|605666832|605667222|CA|403|F305 7\n",
      "MITE_T_123658|chr1A|304650161|304650959|AAAAAA|807|F5798 7\n",
      "MITE_T_68382|chr7A|93278965|93279133|AT|18|F2760 7\n",
      "MITE_T_80702|chr3A|502404625|502404767|TCA|16|F3458 7\n",
      "MITE_T_6011|chr4A|658864646|658865028|GC|20|F359 7\n",
      "MITE_T_49276|chr5B|423350522|423350762|TA|71|F1919 7\n",
      "MITE_T_122509|chr4B|456649400|456650102|AT|17|F5735 7\n",
      "MITE_T_51696|chr3A|571404278|571404511|TA|16|F2033 7\n",
      "MITE_T_2721|chr6A|97316659|97317081|TGCCCTGGT|148|F181 7\n",
      "MITE_T_65245|chr6B|41606988|41607161|GCCA|39|F2634 7\n",
      "MITE_T_9733|chr3D|544993285|544993632|GTAC|15|F548 7\n",
      "MITE_T_125395|chr4B|32918669|32919278|TTTGCGTT|16|F5866 7\n",
      "MITE_T_6069|chr4D|488925121|488925502|AA|64|F364 7\n",
      "MITE_T_88389|chr1A|14584380|14584505|TA|133|F3804 7\n",
      "MITE_T_76817|chr5A|640723872|640724031|GTCAC|23|F3239 7\n",
      "MITE_T_63848|chr3A|631290588|631290766|CTAG|23|F2548 7\n",
      "MITE_T_78117|chr1A|61252293|61252447|TATATATA|31|F3341 7\n",
      "MITE_T_66127|chr7D|229790983|229791154|AT|40|F2671 6\n",
      "MITE_T_39504|chr7A|232201711|232201971|AA|14|F1652 6\n",
      "MITE_T_62652|chr1A|539324554|539324735|GGACCT|15|F2510 6\n",
      "MITE_T_39330|chr1D|30661540|30662285|ATT|14|F1633 6\n",
      "MITE_T_13324|chr7A|690433972|690434306|CT|34|F629 6\n",
      "MITE_T_1542|chr3D|396602275|396602712|CG|55|F117 6\n",
      "MITE_T_68510|chr1A|276575092|276575260|TA|178|F2766 6\n",
      "MITE_T_2809|chr4D|482718408|482718829|GTCGGTGTA|85|F186 6\n",
      "MITE_T_123645|chr4A|616208915|616209713|TAA|13|F5796 6\n",
      "MITE_T_86295|chr6D|330113704|330113832|TTA|48|F3708 6\n",
      "MITE_T_7355|chr2B|140537358|140537731|AT|20|F415 6\n",
      "MITE_T_62580|chr2B|67419964|67420763|CCAACATG|14|F2501 6\n",
      "MITE_T_74315|chr4B|592674885|592675047|TATT|15|F3047 6\n",
      "MITE_T_52646|chr4D|88262526|88263266|CAGTG|19|F2047 6\n",
      "MITE_T_111178|chr3A|518640180|518640269|AT|27|F5067 6\n",
      "MITE_T_61926|chr6B|644800814|644800999|ATAT|55|F2442 6\n",
      "MITE_T_294|chr4A|666275206|666275678|TTA|21|F31 6\n",
      "MITE_T_1589|chr5B|527944998|527945435|GCC|450|F120 6\n",
      "MITE_T_128260|chr7A|63316273|63316773|TAA|28|F6006 6\n",
      "MITE_T_123881|chr6A|462185704|462186367|CG|13|F5814 6\n",
      "MITE_T_18626|chr3B|243513111|243513428|AT|13|F779 6\n",
      "MITE_T_54333|chr5D|487171292|487171511|AT|34|F2127 6\n",
      "MITE_T_8335|chr6B|257787519|257787882|TA|43|F472 6\n",
      "MITE_T_80582|chr2D|635073288|635073432|CT|14|F3444 6\n",
      "MITE_T_3156|chr3A|678000631|678001395|AATAATGAG|113|F207 6\n",
      "MITE_T_2516|chr7D|575753379|575754144|GTTGAGGG|10|F165 6\n",
      "MITE_T_7987|chr3A|715367184|715367551|GTT|21|F455 6\n",
      "MITE_T_31538|chr3D|32181132|32181408|TCAACATTT|69|F1263 6\n",
      "MITE_T_21732|chr4D|254678347|254678653|TAA|16|F887 6\n",
      "MITE_T_37332|chr1A|13642321|13642586|AA|32|F1539 6\n",
      "MITE_T_50944|chr1D|58874462|58874698|TA|245|F2001 6\n",
      "MITE_T_125111|chr7A|631368281|631368905|TTACGCAC|19|F5849 6\n",
      "MITE_T_126801|chr7B|78567635|78568204|CTTCCCT|14|F5915 6\n",
      "MITE_T_128133|chr6A|387278463|387278964|GC|34|F6000 6\n",
      "MITE_T_62630|chr1B|537465036|537465217|TGCA|25|F2508 6\n",
      "MITE_T_71267|chr6B|118215978|118216142|TAGTAG|14|F2930 6\n",
      "MITE_T_62473|chr2B|28920831|28921013|ACGAGTAG|14|F2489 6\n",
      "MITE_T_75400|chr5A|444844970|444845131|CTT|20|F3117 6\n",
      "MITE_T_58910|chr1A|267195585|267195785|AA|203|F2262 6\n",
      "MITE_T_3991|chr5A|356105445|356105848|TA|33|F253 6\n",
      "MITE_T_668|chr4D|158379415|158379874|TAA|12|F55 6\n",
      "MITE_T_20016|chr6A|560640292|560640604|CTGG|16|F824 6\n",
      "MITE_T_13513|chr4A|552808929|552809261|TAA|15|F639 6\n",
      "MITE_T_36387|chr5B|650346940|650347207|TA|281|F1503 6\n",
      "MITE_T_63814|chr4D|491956558|491956737|CG|20|F2544 6\n",
      "MITE_T_2269|chr1A|549694656|549695082|TGA|25|F155 6\n",
      "MITE_T_127780|chr4A|5610528|5611051|TTTATC|16|F5979 6\n",
      "MITE_T_82806|chr4D|392514709|392514841|TA|14|F3584 6\n",
      "MITE_T_81162|chr1A|558147968|558148107|TCA|30|F3486 6\n",
      "MITE_T_2863|chr1D|483448891|483449311|TA|33|F190 6\n",
      "MITE_T_29323|chr4A|707183445|707183728|TAGTT|49|F1177 6\n",
      "MITE_T_127793|chr7D|37545737|37546258|CTGGAA|17|F5981 6\n",
      "MITE_T_63392|chr1A|336482341|336482520|TA|38|F2537 6\n",
      "MITE_T_22425|chr2B|616948106|616948410|AT|34|F919 6\n",
      "MITE_T_262|chr7A|294695934|294696409|AT|41|F26 6\n",
      "MITE_T_6177|chr6A|603269250|603269630|CAA|24|F367 6\n",
      "MITE_T_1|chr2B|413009710|413010196|AT|24|F1 6\n",
      "MITE_T_9164|chr6A|16606506|16606860|TTA|19|F518 6\n",
      "MITE_T_43513|chr3B|525397355|525397599|AT|30|F1848 6\n",
      "MITE_T_64445|chr7A|133627715|133627890|TTT|42|F2596 6\n",
      "MITE_T_77603|chr6A|96981889|96982046|GC|52|F3312 6\n",
      "MITE_T_83280|chr3D|439812721|439812852|GC|17|F3608 6\n",
      "MITE_T_2248|chr4D|48638359|48638788|TCA|12|F153 6\n",
      "MITE_T_1347|chr5A|451393532|451393974|TT|49|F104 6\n",
      "MITE_T_80991|chr2D|450914191|450914332|AATA|21|F3473 6\n",
      "MITE_T_17|chr5B|313155880|313156365|ATA|25|F3 6\n",
      "MITE_T_42761|chr2D|114690842|114691090|CCGGAGAA|70|F1814 6\n",
      "MITE_T_18898|chr4D|85992617|85992932|TAGGTCCCG|46|F796 6\n",
      "MITE_T_18526|chr3B|101009489|101009807|CTCCTTGA|13|F774 6\n",
      "MITE_T_18489|chr1A|68020570|68020888|ACCAAGAG|10|F770 6\n",
      "MITE_T_8215|chr6A|566422307|566422672|CCACCGAAC|385|F465 6\n",
      "MITE_T_39395|chr5A|436818959|436819704|CACAAATA|16|F1640 6\n",
      "MITE_T_62155|chr4B|612272674|612272857|GC|21|F2464 6\n",
      "MITE_T_127787|chr7A|696060645|696061168|TTA|48|F5980 6\n",
      "MITE_T_7924|chr5A|349044286|349044653|CA|15|F451 6\n",
      "MITE_T_59649|chr6B|457435100|457435294|GC|22|F2316 6\n",
      "MITE_T_81791|chr1A|303796459|303796595|AGT|18|F3529 6\n",
      "MITE_T_81338|chr2D|579962343|579962481|TA|22|F3499 6\n",
      "MITE_T_100|chr4B|149720156|149720951|AT|279|F15 6\n",
      "MITE_T_13318|chr6B|62388970|62389725|CCAC|159|F628 6\n",
      "MITE_T_78124|chr1A|405349919|405350073|GC|10|F3342 6\n",
      "MITE_T_80465|chr7A|664121135|664121282|AT|156|F3432 5\n",
      "MITE_T_95|chr3D|67182689|67183171|AG|39|F14 5\n",
      "MITE_T_35424|chr1A|53445010|53445280|AAC|54|F1456 5\n",
      "MITE_T_78289|chr3B|262424957|262425111|CT|27|F3351 5\n",
      "MITE_T_41657|chr5B|149588867|149589121|AT|18|F1768 5\n",
      "MITE_T_27170|chr1A|37759798|37760088|GAA|25|F1076 5\n",
      "MITE_T_52936|chr4A|22221383|22222123|TA|21|F2062 5\n",
      "MITE_T_272|chr2B|717771453|717771928|ACCAC|27|F28 5\n",
      "MITE_T_78436|chr2B|638512508|638513234|TA|23|F3370 5\n",
      "MITE_T_95104|chr2B|707612085|707612201|TA|123|F4134 5\n",
      "MITE_T_40884|chr3B|29755424|29755681|ATAT|11|F1717 5\n",
      "MITE_T_20250|chr4B|553863335|553863646|CA|41|F838 5\n",
      "MITE_T_31845|chr3D|577507730|577508006|AT|27|F1277 5\n",
      "MITE_T_54|chr7B|693273065|693273549|ACTCAT|37|F8 5\n",
      "MITE_T_62071|chr2A|49939947|49940130|CATG|22|F2455 5\n",
      "MITE_T_6550|chr6D|81742600|81742979|TA|34|F379 5\n",
      "MITE_T_16582|chr2B|181755720|181756046|TA|24|F700 5\n",
      "MITE_T_5765|chr1B|538871064|538871447|AT|20|F349 5\n",
      "MITE_T_71395|chr2A|216837731|216837895|GC|25|F2937 5\n",
      "MITE_T_9064|chr7A|108818514|108818870|ATAGT|115|F511 5\n",
      "MITE_T_63998|chr1B|406358867|406359045|TATAAG|19|F2557 5\n",
      "MITE_T_7037|chr1D|58880683|58881057|TTA|18|F405 5\n",
      "MITE_T_80542|chr4B|465734868|465735013|ATAGGA|17|F3440 5\n",
      "MITE_T_123205|chr3A|60763287|60763981|GG|11|F5773 5\n",
      "MITE_T_25980|chr2A|731084668|731084961|TC|24|F1044 5\n",
      "MITE_T_29593|chr1D|393688399|393689147|CTA|11|F1180 5\n",
      "MITE_T_804|chr2A|443135746|443136200|AT|18|F74 5\n",
      "MITE_T_63063|chr4B|488145108|488145288|ACATAG|14|F2524 5\n",
      "MITE_T_65255|chr2B|305318884|305319057|ATCTGAGC|16|F2636 5\n",
      "MITE_T_5175|chr4A|626952592|626952982|AT|20|F314 5\n",
      "MITE_T_65906|chr7A|174839527|174839698|TCCA|40|F2668 5\n",
      "MITE_T_114310|chr6A|22527540|22527626|TA|90|F5202 5\n",
      "MITE_T_25744|chr4B|575769078|575769372|TCA|43|F1032 5\n",
      "MITE_T_13421|chr3B|273248588|273248921|TA|29|F631 5\n",
      "MITE_T_125212|chr4B|488678230|488679013|AT|22|F5857 5\n",
      "MITE_T_125846|chr1B|208993142|208993738|TA|19|F5882 5\n",
      "MITE_T_128129|chr2D|517046550|517047055|GC|26|F5999 5\n",
      "MITE_T_63355|chr2B|486733671|486733850|AT|35|F2534 5\n",
      "MITE_T_5536|chr6A|264842601|264842986|TG|37|F336 5\n",
      "MITE_T_85047|chr6A|11559227|11559356|TTA|15|F3657 5\n"
     ]
    },
    {
     "name": "stdout",
     "output_type": "stream",
     "text": [
      "MITE_T_244|chr4A|713410384|713410860|AT|11|F24 5\n",
      "MITE_T_127543|chr7B|606618439|606618981|CCGGAA|16|F5958 5\n",
      "MITE_T_126037|chr7B|265166783|265167375|AT|10|F5885 5\n",
      "MITE_T_126917|chr5A|673765552|673766114|CTCTCCTC|12|F5923 5\n",
      "MITE_T_417|chr3A|333269323|333269791|TAGCCCAAG|470|F41 5\n",
      "MITE_T_31025|chr6A|569440156|569440433|AT|21|F1253 5\n",
      "MITE_T_96210|chr2A|351171954|351172067|CG|35|F4217 5\n",
      "MITE_T_126261|chr6A|258370089|258370676|TA|42|F5892 5\n",
      "MITE_T_60111|chr7B|189557027|189557217|AAG|65|F2357 5\n",
      "MITE_T_68683|chr7B|41200957|41201125|CA|34|F2777 5\n",
      "MITE_T_5198|chr6B|99071890|99072279|TAA|14|F316 5\n",
      "MITE_T_64189|chr5A|543965110|543965287|TCCATAAG|14|F2572 5\n",
      "MITE_T_6722|chr2A|763824085|763824462|TTA|21|F387 5\n",
      "MITE_T_43068|chr2B|594837037|594837283|TA|21|F1832 5\n",
      "MITE_T_38450|chr1D|457223477|457223740|AATT|44|F1589 5\n",
      "MITE_T_123715|chr1B|213245571|213246249|TTA|23|F5802 5\n",
      "MITE_T_754|chr1B|457347514|457347969|TTGATACCC|19|F68 5\n",
      "MITE_T_127069|chr5B|191007740|191008295|TA|19|F5933 5\n",
      "MITE_T_4185|chr4A|627701667|627702069|TA|426|F259 5\n",
      "MITE_T_116074|chr2A|683551735|683552445|CGTAGATTC|123|F5287 5\n",
      "MITE_T_1200|chr6A|1096698|1097143|ACCT|34|F96 5\n",
      "MITE_T_37562|chr2B|442799911|442800175|TTA|39|F1552 5\n",
      "MITE_T_66372|chr4A|66389971|66390141|AGT|13|F2696 5\n",
      "MITE_T_125711|chr5D|41751980|41752579|CT|28|F5877 5\n",
      "MITE_T_81922|chr6A|506544184|506544907|TA|10|F3539 5\n",
      "MITE_T_59|chr5B|14169738|14170221|TAA|23|F9 5\n",
      "MITE_T_9461|chr6B|715682508|715682857|TA|29|F540 5\n",
      "MITE_T_19377|chr5A|452927645|452928439|TTA|30|F816 5\n",
      "MITE_T_109361|chr2D|73569826|73569918|AT|98|F4973 5\n",
      "MITE_T_3354|chr3A|739137118|739137531|CGCG|21|F220 5\n",
      "MITE_T_20884|chr2A|478503905|478504214|TAA|33|F854 5\n",
      "MITE_T_127946|chr1B|180690908|180691419|TCC|47|F5992 5\n",
      "MITE_T_1895|chr5B|306453507|306453940|GCAAC|31|F135 5\n",
      "MITE_T_4548|chr5D|30120808|30121206|TCGA|36|F271 5\n",
      "MITE_T_59048|chr2A|2875866|2876065|GTACCAAT|15|F2274 5\n",
      "MITE_T_31782|chr1D|33264709|33264985|TTA|16|F1270 5\n",
      "MITE_T_61990|chr4D|311218590|311218774|CAGTG|22|F2449 5\n",
      "MITE_T_13875|chr2D|109727555|109727886|ATATGTA|49|F660 5\n",
      "MITE_T_128185|chr1D|485038224|485038724|ACTTCTAAA|36|F6003 4\n",
      "MITE_T_6782|chr1A|182127292|182127668|AA|23|F390 4\n",
      "MITE_T_2686|chr6B|69452249|69452671|CAAG|51|F180 4\n",
      "MITE_T_10358|chr5A|151384317|151384663|GTTGGGGAA|23|F551 4\n",
      "MITE_T_4698|chr4D|314948761|314949157|GC|31|F283 4\n",
      "MITE_T_9204|chr2D|10782054|10782407|ATGG|361|F522 4\n",
      "MITE_T_59230|chr4A|602102937|602103729|GC|10|F2288 4\n",
      "MITE_T_42647|chr4B|39205737|39205987|GC|251|F1800 4\n",
      "MITE_T_62514|chr7B|717870396|717870578|AT|20|F2494 4\n",
      "MITE_T_70985|chr1A|285728414|285728579|AT|35|F2909 4\n",
      "MITE_T_21813|chr6A|591406081|591406387|GGCACA|16|F891 4\n",
      "MITE_T_91755|chr2B|527699427|527699547|TA|13|F4001 4\n",
      "MITE_T_123667|chr3B|191191915|191192713|TAG|48|F5799 4\n",
      "MITE_T_37765|chr7A|343280778|343281042|TA|26|F1557 4\n",
      "MITE_T_125702|chr4A|506019414|506020015|CTCCTCAT|15|F5875 4\n",
      "MITE_T_9170|chr7A|245939010|245939364|CCGCCTGC|15|F519 4\n",
      "MITE_T_58921|chr5B|589463955|589464155|CTACGA|16|F2263 4\n",
      "MITE_T_1788|chr1B|38211692|38212126|CGTAGACAT|443|F129 4\n",
      "MITE_T_5014|chr4B|646016264|646016655|GG|23|F303 4\n",
      "MITE_T_3855|chr6D|396524347|396524753|AT|30|F241 4\n",
      "MITE_T_7541|chr5A|680508443|680508813|AT|19|F428 4\n",
      "MITE_T_59604|chr7D|64973028|64973223|CCATAA|17|F2311 4\n",
      "MITE_T_31815|chr3A|718349269|718350016|GGCCC|26|F1273 4\n",
      "MITE_T_32659|chr6B|175709653|175709927|TA|41|F1301 4\n",
      "MITE_T_126617|chr4A|28168000|28168779|CGGC|13|F5908 4\n",
      "MITE_T_2642|chr4B|171213830|171214253|GTAC|437|F174 4\n",
      "MITE_T_6895|chr4D|207694926|207695301|TA|27|F400 4\n",
      "MITE_T_41865|chr5B|678625669|678625923|AGCCT|90|F1775 4\n",
      "MITE_T_27701|chr4D|492804264|492804551|ATAT|24|F1104 4\n",
      "MITE_T_59958|chr5A|509995446|509995638|AT|22|F2339 4\n",
      "MITE_T_779|chr6D|385691428|385691883|TAGTT|30|F70 4\n",
      "MITE_T_123595|chr7D|269887157|269887839|CAAGAG|15|F5792 4\n",
      "MITE_T_6854|chr6B|173324607|173324982|TA|19|F398 4\n",
      "MITE_T_66458|chr7D|28440624|28440794|TA|26|F2704 4\n",
      "MITE_T_17523|chr3B|681188713|681189037|CG|42|F720 4\n",
      "MITE_T_15965|chr7D|197146359|197146686|GC|54|F685 4\n",
      "MITE_T_21809|chr1A|27132966|27133272|CG|62|F890 4\n",
      "MITE_T_7442|chr7B|143155632|143156002|TAA|36|F421 4\n",
      "MITE_T_123515|chr2D|569517542|569518226|GG|14|F5787 4\n",
      "MITE_T_59450|chr1D|37883869|37884064|ATT|25|F2301 4\n",
      "MITE_T_8560|chr6B|132343384|132343745|TA|19|F480 4\n",
      "MITE_T_127296|chr7D|78118191|78118740|AA|162|F5946 4\n",
      "MITE_T_24715|chr3A|580459341|580460091|ATCATTGG|11|F986 4\n",
      "MITE_T_8581|chr1D|204266815|204267176|GC|25|F482 4\n",
      "MITE_T_127488|chr5B|159884177|159884722|CTA|20|F5953 4\n",
      "MITE_T_55305|chr5A|693649441|693649655|CA|48|F2188 4\n",
      "MITE_T_109189|chr1B|527289170|527289882|TT|24|F4965 4\n",
      "MITE_T_121890|chr6A|59298322|59298402|GA|16|F5639 4\n",
      "MITE_T_125749|chr1A|115134207|115134988|CTCATGTTA|173|F5880 4\n",
      "MITE_T_123726|chr6D|98169234|98169910|GAAAA|678|F5804 4\n",
      "MITE_T_28434|chr6A|552741830|552742115|AT|23|F1130 4\n",
      "MITE_T_127937|chr7D|33045237|33045749|TAA|48|F5991 4\n",
      "MITE_T_124490|chr5A|370194807|370195452|TAA|11|F5836 4\n",
      "MITE_T_5541|chr2A|214241738|214242123|GC|47|F337 4\n",
      "MITE_T_71253|chr3B|169136929|169137094|GC|46|F2928 4\n",
      "MITE_T_32602|chr6B|114954744|114955018|TA|15|F1298 4\n",
      "MITE_T_35083|chr3A|224261109|224261380|TA|10|F1439 4\n",
      "MITE_T_123149|chr3D|151823049|151823838|GTCGCTGG|13|F5771 4\n",
      "MITE_T_45772|chr4B|433180502|433180743|TTA|250|F1901 4\n",
      "MITE_T_75917|chr2B|79028480|79028640|TAA|16|F3160 4\n",
      "MITE_T_122810|chr2A|196080501|196081291|GAGGCAGT|13|F5759 4\n",
      "MITE_T_78191|chr2A|669618270|669618424|GC|38|F3344 4\n",
      "MITE_T_70454|chr3D|432021656|432021822|TGTT|18|F2880 4\n",
      "MITE_T_6567|chr5B|281480771|281481149|CT|36|F381 4\n",
      "MITE_T_62203|chr2B|445692124|445692307|AT|24|F2468 4\n",
      "MITE_T_5455|chr5D|449085613|449085999|TAA|15|F331 4\n",
      "MITE_T_58617|chr4B|120250388|120250590|CTTGAAG|24|F2244 4\n",
      "MITE_T_9425|chr3D|40258027|40258377|TA|10|F537 4\n",
      "MITE_T_74399|chr3B|592303612|592304341|AT|15|F3054 4\n",
      "MITE_T_2617|chr2D|502514691|502515115|TA|451|F170 4\n",
      "MITE_T_105411|chr1D|409421555|409422268|AT|25|F4728 4\n",
      "MITE_T_80619|chr2A|742155796|742155940|TTA|10|F3450 4\n",
      "MITE_T_13532|chr2A|46846700|46847032|TA|10|F641 4\n",
      "MITE_T_77103|chr1A|60360702|60360860|GC|36|F3271 4\n",
      "MITE_T_3147|chr4B|18971578|18971993|AGCTAGCT|10|F206 4\n",
      "MITE_T_69860|chr7D|9180968|9181135|GC|22|F2850 4\n",
      "MITE_T_128331|chr2A|557278430|557278925|TA|29|F6009 4\n",
      "MITE_T_41451|chr6D|230776827|230777571|TAA|19|F1755 4\n",
      "MITE_T_7057|chr4A|110087358|110087732|TA|10|F407 4\n",
      "MITE_T_69590|chr3A|561060991|561061158|TATA|34|F2835 4\n",
      "MITE_T_8534|chr3A|611943570|611943932|TAA|16|F476 4\n",
      "MITE_T_73516|chr6B|593383693|593384422|GCTCCAAG|11|F3008 4\n",
      "MITE_T_123063|chr5D|491723343|491724039|TCTCTT|19|F5767 4\n",
      "MITE_T_42818|chr3A|444286764|444287011|TA|15|F1822 4\n",
      "MITE_T_6842|chr4A|719269016|719269392|TA|34|F397 4\n",
      "MITE_T_70641|chr1D|321673254|321673419|GC|10|F2895 4\n",
      "MITE_T_125148|chr5D|373566725|373567345|CG|23|F5852 4\n",
      "MITE_T_45035|chr7A|127913716|127913959|TTA|16|F1865 4\n",
      "MITE_T_58649|chr7D|423887140|423887876|GC|33|F2247 4\n",
      "MITE_T_4568|chr5D|549996903|549997301|TAA|12|F273 4\n",
      "MITE_T_325|chr3B|592271662|592272133|TTA|22|F34 4\n",
      "MITE_T_2833|chr1D|37961110|37961531|GG|52|F188 4\n",
      "MITE_T_127058|chr6D|403034221|403035017|TGGA|14|F5932 4\n",
      "MITE_T_59780|chr2D|17644881|17645073|GC|201|F2330 4\n",
      "MITE_T_76615|chr5D|329780447|329780606|AT|22|F3227 4\n",
      "MITE_T_62584|chr2D|95635312|95636044|AGGAG|111|F2502 4\n",
      "MITE_T_2826|chr4B|571467709|571468130|GA|27|F187 4\n",
      "MITE_T_29951|chr5D|546382559|546383307|TAA|29|F1203 4\n",
      "MITE_T_68996|chr4A|47388087|47388254|AT|16|F2792 3\n",
      "MITE_T_7121|chr7D|426563117|426563491|GC|19|F410 3\n",
      "MITE_T_122702|chr2B|476704370|476705072|AT|10|F5743 3\n",
      "MITE_T_123587|chr2D|470003067|470003750|CA|16|F5791 3\n",
      "MITE_T_79100|chr3D|428398780|428398930|AGTCAG|20|F3404 3\n",
      "MITE_T_66319|chr7A|52435709|52435880|AT|17|F2689 3\n",
      "MITE_T_49776|chr6D|382617311|382617550|CC|242|F1946 3\n",
      "MITE_T_54313|chr5A|426933039|426933258|AA|28|F2125 3\n",
      "MITE_T_123971|chr7B|212824958|212825617|AT|13|F5818 3\n",
      "MITE_T_3753|chr2B|794912112|794912520|AAA|73|F235 3\n",
      "MITE_T_22159|chr6B|40891536|40891841|TAGTG|10|F903 3\n",
      "MITE_T_7635|chr5A|624009752|624010121|TA|41|F437 3\n",
      "MITE_T_128181|chr7D|532359482|532359983|TAA|43|F6002 3\n",
      "MITE_T_21645|chr7D|89719124|89719431|AT|23|F881 3\n",
      "MITE_T_8732|chr5B|280606826|280607186|CG|14|F490 3\n",
      "MITE_T_124223|chr1A|245117825|245118481|TA|23|F5821 3\n",
      "MITE_T_5531|chr2A|624043093|624043478|GC|21|F335 3\n",
      "MITE_T_80708|chr5D|142041877|142042601|TA|10|F3459 3\n",
      "MITE_T_122116|chr3A|516837241|516837948|CG|82|F5668 3\n",
      "MITE_T_6834|chr5A|673014148|673014524|AAT|33|F396 3\n",
      "MITE_T_22608|chr1D|101589656|101589958|GATC|22|F928 3\n",
      "MITE_T_35544|chr7D|587390043|587390312|AACATCT|278|F1464 3\n",
      "MITE_T_66241|chr4A|744319415|744319586|AT|44|F2679 3\n",
      "MITE_T_4830|chr1D|41600574|41600967|GC|22|F291 3\n",
      "MITE_T_69357|chr3B|686020252|686020419|TA|28|F2824 3\n",
      "MITE_T_17721|chr5D|560530140|560530463|TA|39|F728 3\n",
      "MITE_T_22904|chr7B|176357221|176357521|TA|13|F946 3\n",
      "MITE_T_2128|chr7B|741615043|741615473|AT|54|F148 3\n",
      "MITE_T_449|chr4A|603492597|603493063|AT|31|F46 3\n",
      "MITE_T_75494|chr4D|500789680|500789841|GCGG|15|F3127 3\n",
      "MITE_T_60164|chr1B|614104804|614104994|TCCTCAAG|14|F2363 3\n",
      "MITE_T_2633|chr1A|57405847|57406270|GCACGG|432|F173 3\n",
      "MITE_T_58636|chr3A|269591322|269591524|AT|44|F2246 3\n",
      "MITE_T_76971|chr2A|527378726|527378884|GC|36|F3257 3\n",
      "MITE_T_17997|chr2A|450160353|450160674|TA|39|F741 3\n",
      "MITE_T_18892|chr2B|746011119|746011434|CTCTCAGC|13|F795 3\n",
      "MITE_T_283|chr2A|81165545|81166017|AAAAATATC|478|F30 3\n"
     ]
    },
    {
     "name": "stdout",
     "output_type": "stream",
     "text": [
      "MITE_T_6287|chr4D|81454592|81454972|TAA|16|F373 3\n",
      "MITE_T_8720|chr3A|58887896|58888256|GAT|21|F489 3\n",
      "MITE_T_113008|chr1A|504258244|504258331|AGTATT|21|F5142 3\n",
      "MITE_T_3837|chr2A|575652976|575653382|CCATATGG|432|F240 3\n",
      "MITE_T_6830|chr3A|25813978|25814354|TA|24|F395 3\n",
      "MITE_T_123966|chr5A|152093221|152094007|GC|10|F5817 3\n",
      "MITE_T_21617|chr5B|591582026|591582333|AT|37|F878 3\n",
      "MITE_T_127539|chr7A|180242821|180243363|TTA|18|F5957 3\n",
      "MITE_T_80591|chr3A|142581470|142581614|CA|14|F3446 3\n",
      "MITE_T_35246|chr7B|205370078|205370824|ACCGTACC|13|F1448 3\n",
      "MITE_T_61078|chr2B|101781428|101781616|TAGC|16|F2396 3\n",
      "MITE_T_9457|chr5D|537981754|537982103|TTA|10|F539 3\n",
      "MITE_T_123740|chr4D|118430760|118431434|AT|20|F5806 3\n",
      "MITE_T_126381|chr5B|477882391|477882970|TA|38|F5900 3\n",
      "MITE_T_125283|chr4B|528897707|528898490|TGG|15|F5860 3\n",
      "MITE_T_22222|chr3B|576344020|576344325|GTTTTCCT|28|F910 3\n",
      "MITE_T_122463|chr5A|58530715|58531418|TTA|18|F5726 3\n",
      "MITE_T_9009|chr1B|276058601|276058958|TA|10|F508 3\n",
      "MITE_T_100968|chr6B|402210929|402211034|TA|112|F4440 3\n",
      "MITE_T_116236|chr7D|43365366|43365450|GTAC|94|F5296 3\n",
      "MITE_T_4742|chr4B|529734486|529734880|TA|16|F288 3\n",
      "MITE_T_77590|chr3B|821979667|821979824|GC|36|F3310 3\n",
      "MITE_T_2653|chr1A|372170038|372170460|AACTGTGGA|127|F176 3\n",
      "MITE_T_3975|chr3D|123367784|123368188|TG|179|F251 3\n",
      "MITE_T_21629|chr3A|53337060|53337367|TA|16|F879 3\n",
      "MITE_T_70873|chr4A|691472155|691472320|GC|46|F2901 3\n",
      "MITE_T_439|chr6D|460793708|460794175|GGCAG|13|F44 3\n",
      "MITE_T_68504|chr7A|20116556|20116724|AT|14|F2765 3\n",
      "MITE_T_8031|chr3A|37835307|37835673|GGA|70|F459 3\n",
      "MITE_T_39373|chr4D|439660936|439661197|TA|271|F1638 3\n",
      "MITE_T_2188|chr1D|294460606|294461035|TA|35|F150 3\n",
      "MITE_T_22619|chr2A|51185443|51185745|GCCATTACA|37|F929 3\n",
      "MITE_T_22835|chr1A|143280506|143280807|TA|10|F939 3\n",
      "MITE_T_124321|chr4D|352574884|352575537|GCTACAAG|11|F5826 3\n",
      "MITE_T_58899|chr2D|68599159|68599359|GGC|17|F2260 3\n",
      "MITE_T_56474|chr2B|457345842|457346050|CA|216|F2209 3\n",
      "MITE_T_9294|chr1D|418300550|418300902|AGTTC|356|F526 3\n",
      "MITE_T_1966|chr5B|26877910|26878342|TGGTGGCTAG|151|F141 3\n",
      "MITE_T_122820|chr6D|318786154|318786205|AAT|48|F5760 3\n",
      "MITE_T_36765|chr7A|136287919|136288184|TA|23|F1523 3\n",
      "MITE_T_77502|chr2D|644869192|644869349|AA|28|F3302 3\n",
      "MITE_T_80552|chr6B|462025905|462026050|CCGG|25|F3442 3\n",
      "MITE_T_81432|chr5D|364732982|364733120|TAA|37|F3504 3\n",
      "MITE_T_122163|chr7B|8923356|8923428|AT|83|F5677 3\n",
      "MITE_T_77003|chr6B|16643585|16643743|AA|61|F3260 3\n",
      "MITE_T_123720|chr3D|545426726|545427403|TGTGTATG|14|F5803 3\n",
      "MITE_T_105849|chr6A|143078165|143078260|AT|100|F4755 3\n",
      "MITE_T_68611|chr6A|35255759|35255927|AT|14|F2772 3\n",
      "MITE_T_125594|chr3D|244036212|244036820|TTA|43|F5869 3\n",
      "MITE_T_41900|chr3A|475279713|475280457|TA|27|F1778 3\n",
      "MITE_T_52703|chr4D|424605093|424605322|TA|76|F2051 3\n",
      "MITE_T_19218|chr5B|247282939|247283252|ACTAGT|10|F806 3\n",
      "MITE_T_3243|chr3A|212096376|212096790|CA|432|F213 3\n",
      "MITE_T_76769|chr5B|544398264|544398423|CCTGGGAA|13|F3235 3\n",
      "MITE_T_68423|chr3A|695679598|695679766|AT|17|F2763 3\n",
      "MITE_T_258|chr2D|133930038|133930513|CCAT|14|F25 3\n",
      "MITE_T_81475|chr7B|72052333|72052471|GC|13|F3507 3\n",
      "MITE_T_895|chr3B|306546968|306547418|AT|25|F84 3\n",
      "MITE_T_42324|chr7B|668210331|668210583|CGG|23|F1786 3\n",
      "MITE_T_6420|chr5D|416216765|416217144|GAGC|391|F376 3\n",
      "MITE_T_421|chr2A|552297624|552298091|AGT|35|F42 3\n",
      "MITE_T_58978|chr1A|406619605|406619804|TTT|206|F2268 3\n",
      "MITE_T_67281|chr5A|615163494|615163664|AAGAGA|17|F2718 3\n",
      "MITE_T_58664|chr1D|99072040|99072242|TA|211|F2249 3\n",
      "MITE_T_123744|chr6D|108670720|108671392|CCGTGAGC|16|F5807 3\n",
      "MITE_T_65289|chr2B|29224371|29224544|GGCGTGAT|10|F2639 3\n",
      "MITE_T_6019|chr6A|357036390|357036771|AG|15|F360 2\n",
      "MITE_T_61279|chr4A|743608610|743608797|CTAGCA|15|F2406 2\n",
      "MITE_T_122478|chr5A|475248043|475248833|ATAT|812|F5729 2\n",
      "MITE_T_3127|chr4B|99751548|99751965|TCA|13|F203 2\n",
      "MITE_T_8967|chr3D|308276410|308276767|CAG|44|F506 2\n",
      "MITE_T_59128|chr5B|539933117|539933315|CCCCTTGT|16|F2282 2\n",
      "MITE_T_122178|chr3A|383714541|383714612|TA|24|F5680 2\n",
      "MITE_T_13843|chr1A|407524806|407525137|CTCGAG|22|F656 2\n",
      "MITE_T_73465|chr3D|570952123|570952286|TA|44|F3002 2\n",
      "MITE_T_17853|chr4A|618264814|618265136|AT|13|F734 2\n",
      "MITE_T_60106|chr2A|13615914|13616104|AA|21|F2356 2\n",
      "MITE_T_43108|chr6D|388533911|388534157|TA|23|F1836 2\n",
      "MITE_T_76851|chr2B|666099736|666099895|AGCCAC|17|F3244 2\n",
      "MITE_T_4561|chr5B|495655150|495655548|TAA|43|F272 2\n",
      "MITE_T_59093|chr4D|319268085|319268283|GGCGTTAG|13|F2279 2\n",
      "MITE_T_126603|chr4A|730885683|730886258|TA|14|F5907 2\n",
      "MITE_T_53038|chr1D|465781325|465781550|AT|30|F2071 2\n",
      "MITE_T_80184|chr3D|403347452|403347601|AT|47|F3408 2\n",
      "MITE_T_53043|chr2D|181304108|181304333|AT|32|F2072 2\n",
      "MITE_T_4958|chr2B|129600556|129600948|AAATTT|406|F299 2\n",
      "MITE_T_81644|chr1B|561752414|561752551|AGT|20|F3522 2\n",
      "MITE_T_49290|chr3D|582223904|582224144|TT|245|F1920 2\n",
      "MITE_T_125166|chr6B|668719336|668719956|AT|25|F5853 2\n",
      "MITE_T_11011|chr4B|559158287|559158629|CATCT|24|F578 2\n",
      "MITE_T_7077|chr2B|403696383|403696757|GC|390|F408 2\n",
      "MITE_T_65461|chr1A|535402354|535402526|TA|16|F2645 2\n",
      "MITE_T_16719|chr3D|553042924|553043249|GC|20|F708 2\n",
      "MITE_T_54581|chr5B|405519879|405520096|TA|29|F2148 2\n",
      "MITE_T_30692|chr2D|615458674|615458953|CC|50|F1228 2\n",
      "MITE_T_41961|chr3B|744321111|744321855|AA|30|F1780 2\n",
      "MITE_T_9314|chr2B|741204625|741204977|GC|21|F528 2\n",
      "MITE_T_50664|chr3A|13912644|13912881|TA|241|F1979 2\n",
      "MITE_T_92012|chr1A|496439984|496440103|AT|126|F4023 2\n",
      "MITE_T_18469|chr3B|662446888|662447206|GC|14|F768 2\n",
      "MITE_T_31778|chr3B|61536195|61536471|TA|21|F1269 2\n",
      "MITE_T_12404|chr4D|387080629|387080965|CCG|18|F611 2\n",
      "MITE_T_127587|chr3B|522866003|522866541|CCCCTACC|13|F5962 2\n",
      "MITE_T_62588|chr2B|46876695|46876876|AT|17|F2503 2\n",
      "MITE_T_127760|chr1B|554635242|554635766|TTA|15|F5977 2\n",
      "MITE_T_12714|chr7B|26688667|26689002|AT|29|F616 2\n",
      "MITE_T_9358|chr2B|235503981|235504333|TG|50|F531 2\n",
      "MITE_T_80302|chr2B|385161128|385161276|GTTACA|18|F3422 2\n",
      "MITE_T_5127|chr3B|823997460|823997850|CT|18|F311 2\n",
      "MITE_T_1368|chr4B|628240068|628240510|GC|11|F106 2\n",
      "MITE_T_4532|chr1D|392567855|392568254|TA|34|F270 2\n",
      "MITE_T_50927|chr4B|477203411|477203647|AT|18|F1999 2\n",
      "MITE_T_127611|chr2B|765033852|765034387|AT|14|F5966 2\n",
      "MITE_T_39216|chr5D|113741356|113741617|AA|270|F1624 2\n",
      "MITE_T_71177|chr7D|513211563|513211728|GC|50|F2922 2\n",
      "MITE_T_42539|chr3D|374362642|374362893|AT|262|F1793 2\n",
      "MITE_T_30619|chr2A|126474372|126475120|TA|11|F1224 2\n",
      "MITE_T_40804|chr5D|314156561|314156819|TA|40|F1709 2\n",
      "MITE_T_3921|chr6D|461709604|461710009|GC|425|F247 2\n",
      "MITE_T_7557|chr7A|10224777|10225146|AC|24|F430 2\n",
      "MITE_T_59022|chr7A|608394228|608394427|TACGAG|14|F2271 2\n",
      "MITE_T_80331|chr6A|100178141|100178289|ACT|13|F3425 2\n",
      "MITE_T_8331|chr2B|693439284|693439648|TA|34|F471 2\n",
      "MITE_T_55436|chr4D|154885093|154885305|ATA|15|F2194 2\n",
      "MITE_T_75044|chr6B|296413519|296413680|TGGT|16|F3094 2\n",
      "MITE_T_32503|chr1B|579930340|579930615|TATA|99|F1295 2\n",
      "MITE_T_126810|chr1A|8601149|8601718|CTAAG|18|F5916 2\n",
      "MITE_T_25968|chr5B|345928455|345928748|TCA|43|F1042 2\n",
      "MITE_T_59114|chr1A|486010208|486010406|ATCA|22|F2280 2\n",
      "MITE_T_124260|chr6A|426955664|426956320|TAT|29|F5822 2\n",
      "MITE_T_123654|chr4B|74351910|74352590|TA|18|F5797 2\n",
      "MITE_T_123263|chr2D|162246791|162247484|GGG|21|F5777 2\n",
      "MITE_T_123844|chr7B|33828080|33828744|CTCGGTAA|24|F5813 2\n",
      "MITE_T_60018|chr3B|786728483|786729217|CTT|13|F2348 2\n",
      "MITE_T_18822|chr7B|601630206|601630522|CT|31|F789 2\n",
      "MITE_T_18246|chr7A|194452568|194452887|GT|23|F753 2\n",
      "MITE_T_18296|chr4D|371556673|371556992|GGCT|18|F756 2\n",
      "MITE_T_45058|chr2A|475729844|475730586|GCCAGGAG|28|F1868 2\n",
      "MITE_T_61355|chr2A|606829559|606829746|TGTCAT|19|F2409 2\n",
      "MITE_T_80282|chr1B|584136394|584136542|GG|12|F3419 2\n",
      "MITE_T_20095|chr7A|556688460|556689212|CGAA|12|F830 2\n",
      "MITE_T_8018|chr7A|714757341|714757708|CT|13|F458 2\n",
      "MITE_T_59076|chr6B|286910792|286910990|TAA|29|F2277 2\n",
      "MITE_T_54252|chr6D|129523368|129523587|TA|28|F2121 2\n",
      "MITE_T_2472|chr2A|57722074|57722499|TA|29|F161 2\n",
      "MITE_T_10|chr3D|462806129|462806614|GC|16|F2 2\n",
      "MITE_T_4953|chr4B|624837609|624838001|TAA|12|F298 2\n",
      "MITE_T_125185|chr2A|293933842|293934461|AT|26|F5855 2\n",
      "MITE_T_5520|chr2A|732220661|732221046|TT|398|F333 2\n",
      "MITE_T_5692|chr7B|399214014|399214398|TA|29|F343 2\n",
      "MITE_T_127135|chr1A|381903111|381903663|CAAAGAAA|13|F5939 2\n",
      "MITE_T_54245|chr7A|711187969|711188189|AT|86|F2120 2\n",
      "MITE_T_76729|chr3B|766703333|766703492|AT|49|F3231 2\n",
      "MITE_T_20820|chr4B|466688798|466689108|TA|30|F850 2\n",
      "MITE_T_2111|chr2A|36472728|36473158|GATGT|152|F147 2\n",
      "MITE_T_80663|chr7D|593116123|593116915|GGCAAGAG|29|F3454 2\n",
      "MITE_T_789|chr5A|431543388|431543843|AGTTGCC|81|F72 2\n",
      "MITE_T_10747|chr6D|238475696|238476041|TA|133|F561 2\n",
      "MITE_T_127532|chr2B|711138709|711139252|CCCT|15|F5956 2\n",
      "MITE_T_14146|chr7A|726982900|726983230|CAG|39|F665 2\n",
      "MITE_T_63007|chr1A|459304379|459304559|CCGA|14|F2522 2\n",
      "MITE_T_127237|chr5B|510534714|510535491|AT|24|F5944 2\n",
      "MITE_T_124351|chr6D|325953047|325953698|ATCCTATG|23|F5829 2\n",
      "MITE_T_21340|chr2D|175971570|175971878|TTACCG|14|F865 2\n",
      "MITE_T_114649|chr2A|16678259|16678345|TA|92|F5224 2\n",
      "MITE_T_62453|chr4B|605786813|605786995|TGGT|16|F2487 2\n",
      "MITE_T_3984|chr4B|391064219|391064623|TAT|16|F252 2\n",
      "MITE_T_4501|chr2B|24865852|24866252|TA|36|F266 2\n",
      "MITE_T_20263|chr1B|4959750|4960061|TA|31|F839 2\n",
      "MITE_T_887|chr7D|548615951|548616402|GG|19|F83 2\n",
      "MITE_T_39812|chr5D|104580325|104580584|GTGCAAGAT|52|F1668 2\n",
      "MITE_T_125364|chr3B|745393342|745393953|GCTGTGTG|11|F5864 2\n",
      "MITE_T_118298|chr3B|172760367|172760449|TGAC|13|F5419 2\n",
      "MITE_T_123293|chr3D|2895213|2895902|AT|20|F5780 2\n",
      "MITE_T_52742|chr3D|428249797|428250025|TA|19|F2055 2\n",
      "MITE_T_58589|chr1B|674791005|674791208|CTACCTTC|23|F2241 2\n",
      "MITE_T_7582|chr7A|267390916|267391285|AT|22|F433 2\n"
     ]
    },
    {
     "name": "stdout",
     "output_type": "stream",
     "text": [
      "MITE_T_125273|chr7B|607328204|607328821|TGAG|626|F5859 2\n",
      "MITE_T_1803|chr4B|660181106|660181540|TA|55|F130 2\n",
      "MITE_T_127460|chr2D|155593845|155594622|CCTCAG|13|F5949 2\n",
      "MITE_T_67555|chr2A|371322653|371322822|AT|19|F2733 2\n",
      "MITE_T_4618|chr1B|463253969|463254731|TA|22|F279 2\n",
      "MITE_T_80286|chr7B|604637890|604638038|AT|24|F3420 2\n",
      "MITE_T_6817|chr1D|331193496|331193872|GC|135|F393 2\n",
      "MITE_T_39448|chr3A|12975679|12975940|TA|277|F1647 2\n",
      "MITE_T_59946|chr5A|491213270|491213462|AC|17|F2338 2\n",
      "MITE_T_71646|chr2D|606132091|606132255|TTA|13|F2961 2\n",
      "MITE_T_65581|chr1D|256246948|256247120|CCGCCAAC|15|F2657 2\n",
      "MITE_T_43087|chr4D|345314475|345314721|ATT|76|F1834 2\n",
      "MITE_T_62266|chr1B|182145823|182146005|TACCAT|15|F2473 2\n",
      "MITE_T_21406|chr4D|93436751|93437058|TA|27|F868 2\n",
      "MITE_T_59016|chr2B|89567338|89567537|GG|24|F2270 2\n",
      "MITE_T_2987|chr6D|357843811|357844229|ACAA|435|F197 2\n",
      "MITE_T_2622|chr2B|319137479|319137903|TTA|16|F171 2\n",
      "MITE_T_76317|chr1B|570574470|570574630|CTCACAAA|14|F3198 2\n",
      "MITE_T_20024|chr2B|31429390|31429702|GTT|26|F825 2\n",
      "MITE_T_21417|chr4A|62797856|62798163|TTA|16|F869 2\n",
      "MITE_T_7533|chr7B|525621290|525621660|AT|380|F427 2\n",
      "MITE_T_279|chr3A|739793414|739793887|CT|24|F29 2\n",
      "MITE_T_7898|chr7D|77036749|77037508|CCATTA|15|F448 2\n",
      "MITE_T_50221|chr1D|374484887|374485125|TA|13|F1962 2\n",
      "MITE_T_70595|chr2B|765556231|765556396|GC|50|F2892 2\n",
      "MITE_T_59623|chr1A|372920140|372920334|AGCG|17|F2313 2\n",
      "MITE_T_60070|chr7D|540413654|540413845|TTGCAA|23|F2353 2\n",
      "MITE_T_3963|chr1D|469104866|469105270|AT|142|F249 2\n",
      "MITE_T_123787|chr5B|547264297|547264967|TAA|15|F5809 2\n",
      "MITE_T_7586|chr2D|20603938|20604307|TTA|38|F434 2\n",
      "MITE_T_65857|chr5A|97240494|97241225|AAAGAGAC|13|F2666 2\n",
      "MITE_T_82177|chr3B|785674872|785675006|AT|19|F3553 2\n",
      "MITE_T_16049|chr4B|545235797|545236124|TA|35|F690 2\n",
      "MITE_T_23449|chr4A|464884676|464884975|TTA|38|F965 2\n",
      "MITE_T_5716|chr5D|552785162|552785546|CG|31|F345 2\n",
      "MITE_T_127567|chr1D|44152050|44152590|GACCCAAG|14|F5960 2\n",
      "MITE_T_36742|chr6A|605397292|605397558|CA|70|F1519 2\n",
      "MITE_T_123257|chr7B|187597156|187597849|GC|12|F5776 2\n",
      "MITE_T_15933|chr2A|60805043|60805371|GGCGGCGTG|33|F682 2\n",
      "MITE_T_2626|chr3D|64199162|64199586|ACGTCCTC|433|F172 2\n",
      "MITE_T_68964|chr1A|111154319|111154487|AT|37|F2788 2\n",
      "MITE_T_64715|chr2D|135484198|135484372|GC|21|F2608 2\n",
      "MITE_T_38121|chr1D|357215517|357215780|GCTG|74|F1575 2\n",
      "MITE_T_50215|chr5D|176106817|176107055|TA|248|F1961 2\n",
      "MITE_T_69573|chr7A|44439471|44439638|CTCCTGCT|18|F2833 2\n",
      "MITE_T_9689|chr5D|565937515|565937863|CTCA|15|F546 2\n",
      "MITE_T_61123|chr5B|69597661|69597849|CAG|20|F2401 2\n",
      "MITE_T_54719|chr3D|394193441|394193658|TCA|47|F2151 2\n",
      "MITE_T_28450|chr3A|20138340|20138625|TG|52|F1133 2\n",
      "MITE_T_2673|chr6B|689114900|689115322|TCTCACTTC|149|F179 2\n",
      "MITE_T_69759|chr5D|551082715|551082882|TA|49|F2843 1\n",
      "MITE_T_18238|chr5A|672373908|672374228|AA|13|F752 1\n",
      "MITE_T_41447|chr6A|459867987|459868243|CAGC|75|F1754 1\n",
      "MITE_T_3254|chr7A|564272070|564272484|CG|440|F214 1\n",
      "MITE_T_124467|chr7A|10629243|10629888|TCCTCC|12|F5835 1\n",
      "MITE_T_1492|chr4A|174807922|174808361|GCCCCAAGG|454|F114 1\n",
      "MITE_T_814|chr2A|39724254|39724708|TTA|18|F76 1\n",
      "MITE_T_20478|chr5D|78014825|78015136|AGGT|16|F844 1\n",
      "MITE_T_126679|chr1B|660656934|660657504|ATT|15|F5913 1\n",
      "MITE_T_5150|chr6B|675781551|675781941|TAA|15|F312 1\n",
      "MITE_T_1737|chr2A|44849298|44849733|TTA|16|F124 1\n",
      "MITE_T_43587|chr6D|298213640|298213884|AT|249|F1854 1\n",
      "MITE_T_42693|chr7A|689550147|689550397|AAT|88|F1804 1\n",
      "MITE_T_57884|chr1D|430064780|430064986|AT|48|F2220 1\n",
      "MITE_T_1086|chr2B|195593566|195594013|GAGCTC|57|F92 1\n",
      "MITE_T_17846|chr5A|410968953|410969275|ATGGTGGG|13|F733 1\n",
      "MITE_T_115851|chr1D|414485485|414486195|CTCACAGT|11|F5272 1\n",
      "MITE_T_61584|chr6A|606777825|606778011|TAGGAT|15|F2422 1\n",
      "MITE_T_126208|chr1A|581029286|581029875|TA|11|F5890 1\n",
      "MITE_T_1777|chr7A|120739524|120739958|TCA|18|F128 1\n",
      "MITE_T_60074|chr7A|670295017|670295208|TGGTAC|15|F2354 1\n",
      "MITE_T_81514|chr3A|631342455|631342592|GC|12|F3511 1\n",
      "MITE_T_66362|chr2A|8371249|8371419|GC|40|F2695 1\n",
      "MITE_T_7093|chr3D|549901683|549902057|GT|29|F409 1\n",
      "MITE_T_13853|chr4A|642406219|642406550|TA|34|F657 1\n",
      "MITE_T_53013|chr7A|66718160|66718386|TT|31|F2068 1\n",
      "MITE_T_126191|chr4A|388580362|388580951|TT|10|F5889 1\n",
      "MITE_T_586|chr7A|183683793|183684255|CTCTG|173|F51 1\n",
      "MITE_T_61049|chr1A|402950349|402950537|AT|42|F2394 1\n",
      "MITE_T_121978|chr5A|568679094|568679802|CG|11|F5652 1\n",
      "MITE_T_836|chr6D|455258338|455258790|TAA|46|F79 1\n",
      "MITE_T_64017|chr1B|561152506|561152684|AT|36|F2560 1\n",
      "MITE_T_5355|chr2A|88324853|88325240|GT|27|F324 1\n",
      "MITE_T_37805|chr2B|332767007|332767752|AT|13|F1560 1\n",
      "MITE_T_64404|chr1B|583214891|583215622|GCGAGA|14|F2591 1\n",
      "MITE_T_3859|chr4A|150564711|150565117|AT|29|F242 1\n",
      "MITE_T_30768|chr6B|17401151|17401429|TA|44|F1232 1\n",
      "MITE_T_28028|chr1A|89573000|89573286|AT|42|F1110 1\n",
      "MITE_T_51690|chr1D|5871023|5871256|TA|241|F2032 1\n",
      "MITE_T_63830|chr1A|497477412|497478144|ATG|14|F2546 1\n",
      "MITE_T_12705|chr7A|736123339|736123675|CCTGTCCT|13|F615 1\n",
      "MITE_T_62023|chr4A|73138333|73138517|AA|25|F2451 1\n",
      "MITE_T_125181|chr7B|144741798|144742417|GC|28|F5854 1\n",
      "MITE_T_127054|chr3A|9502238|9503038|ATCAGGAG|10|F5931 1\n",
      "MITE_T_105383|chr1D|356358815|356358911|CC|24|F4727 1\n",
      "MITE_T_3131|chr6A|359015522|359015938|TTA|18|F204 1\n",
      "MITE_T_45685|chr7D|100233010|100233251|TA|249|F1894 1\n",
      "MITE_T_2878|chr6A|597668652|597669072|CTAG|63|F191 1\n",
      "MITE_T_1913|chr6B|667223348|667223781|GCATGC|461|F138 1\n",
      "MITE_T_123820|chr1A|428159519|428160187|AT|22|F5811 1\n",
      "MITE_T_18630|chr2D|331440022|331440339|GT|37|F780 1\n",
      "MITE_T_617|chr2D|619478842|619479303|TAA|15|F52 1\n",
      "MITE_T_123601|chr2D|364107286|364107968|ATT|16|F5793 1\n",
      "MITE_T_18620|chr5A|560219140|560219457|AAAGC|322|F778 1\n",
      "MITE_T_737|chr5A|461631931|461632387|AAAAAGA|82|F65 1\n",
      "MITE_T_59727|chr6B|172366819|172367553|TTA|23|F2325 1\n",
      "MITE_T_54388|chr3A|733533713|733533931|TATA|33|F2132 1\n",
      "MITE_T_883|chr3B|612292071|612292522|TA|16|F82 1\n",
      "MITE_T_65457|chr4A|738960556|738960728|TA|19|F2644 1\n",
      "MITE_T_55216|chr4A|79049457|79049672|GTTTCTAG|23|F2183 1\n",
      "MITE_T_49322|chr4B|45191513|45192255|GGGAGGAT|11|F1923 1\n",
      "MITE_T_194|chr6B|157585450|157586245|TTA|24|F19 1\n",
      "MITE_T_64011|chr2B|41120135|41120313|AT|39|F2559 1\n",
      "MITE_T_45901|chr7D|133308184|133308424|TAC|240|F1913 1\n",
      "MITE_T_67177|chr6A|595173057|595173227|AT|14|F2714 1\n",
      "MITE_T_123386|chr3B|250275907|250276593|TCGGTACT|23|F5785 1\n",
      "MITE_T_17495|chr6B|151692609|151692933|ATCATACG|13|F718 1\n",
      "MITE_T_765|chr5A|290793519|290793974|GC|172|F69 1\n",
      "MITE_T_70309|chr6D|429354379|429354545|TA|23|F2866 1\n",
      "MITE_T_733|chr1D|416524217|416524673|TTA|17|F64 1\n",
      "MITE_T_8842|chr2A|670235588|670235948|AT|25|F495 1\n",
      "MITE_T_18531|chr4A|740023757|740024074|TCA|27|F775 1\n",
      "MITE_T_8566|chr2D|633165282|633165643|GC|17|F481 1\n",
      "MITE_T_59070|chr4D|207693533|207694268|GC|27|F2276 1\n",
      "MITE_T_13437|chr5D|90145543|90146298|CCTCGCGAGG|10|F634 1\n",
      "MITE_T_127956|chr2B|159850446|159851219|AT|18|F5994 1\n",
      "MITE_T_81930|chr1A|460641021|460641156|TT|30|F3541 1\n",
      "MITE_T_125830|chr2A|591739634|591740415|TTA|24|F5881 1\n",
      "MITE_T_23258|chr1D|467026547|467027341|AT|37|F959 1\n",
      "MITE_T_9307|chr7D|235498663|235499015|TAA|13|F527 1\n",
      "MITE_T_91521|chr5B|421715592|421715713|AG|36|F3983 1\n",
      "MITE_T_123633|chr2B|526764686|526765367|TTTTCTTTT|705|F5795 1\n",
      "MITE_T_35774|chr1A|461771028|461771296|TAT|67|F1476 1\n",
      "MITE_T_127050|chr3D|246631828|246632385|CT|10|F5930 1\n",
      "MITE_T_7689|chr2B|773936960|773937328|CA|38|F439 1\n",
      "MITE_T_1727|chr2D|60794377|60794812|TTA|43|F123 1\n",
      "MITE_T_1499|chr4A|37002238|37002675|AA|25|F115 1\n",
      "MITE_T_39|chr7A|47564705|47565189|TAA|28|F6 1\n",
      "MITE_T_75987|chr4B|247484895|247485055|CACCCATT|15|F3170 1\n",
      "MITE_T_18283|chr7D|276640763|276641082|CTTAG|43|F755 1\n",
      "MITE_T_126833|chr6A|146016372|146016937|TA|11|F5919 1\n",
      "MITE_T_5790|chr2B|28172402|28172785|CT|20|F351 1\n",
      "MITE_T_60692|chr6B|569882453|569882642|CTCG|17|F2375 1\n",
      "MITE_T_231|chr2D|457249320|457250090|AT|15|F22 1\n",
      "MITE_T_62428|chr7A|546058866|546059048|AT|18|F2484 1\n",
      "MITE_T_127220|chr3D|501056653|501057204|TAA|39|F5942 1\n",
      "MITE_T_127482|chr6D|296644724|296645270|GTTTT|548|F5952 1\n",
      "MITE_T_29620|chr1D|365821122|365821404|TG|292|F1184 1\n",
      "MITE_T_1482|chr1B|432244006|432244772|TAA|14|F112 1\n",
      "MITE_T_123312|chr2D|556363279|556363967|TTA|45|F5783 1\n",
      "MITE_T_111550|chr1D|355178894|355178983|TA|33|F5091 1\n",
      "MITE_T_45906|chr7A|222941908|222942148|AT|249|F1914 1\n",
      "MITE_T_59541|chr1A|45588468|45588663|AT|30|F2308 1\n",
      "MITE_T_18263|chr1D|423260266|423260585|TAA|45|F754 1\n",
      "MITE_T_66416|chr7B|244140275|244140445|TT|25|F2701 1\n",
      "MITE_T_79054|chr5A|692489780|692489931|AT|35|F3400 1\n",
      "MITE_T_785|chr6A|446518340|446518795|TAA|16|F71 1\n",
      "MITE_T_76827|chr5A|666678046|666678205|AA|27|F3241 1\n",
      "MITE_T_111231|chr7B|435128297|435128386|TA|24|F5071 1\n",
      "MITE_T_53146|chr2A|481854453|481854677|TA|17|F2084 1\n",
      "MITE_T_69328|chr6A|467577997|467578164|AT|20|F2821 1\n",
      "MITE_T_52764|chr5B|550140478|550140706|GT|33|F2059 1\n",
      "MITE_T_27422|chr7B|656292236|656293030|TA|13|F1087 1\n",
      "MITE_T_2667|chr4B|648574170|648574592|AT|16|F178 1\n",
      "MITE_T_64433|chr7D|60591686|60591862|AT|16|F2594 1\n",
      "MITE_T_18406|chr5B|647877820|647878139|TTA|15|F760 1\n",
      "MITE_T_126266|chr2B|741841687|741842274|TA|13|F5893 1\n",
      "MITE_T_56400|chr7D|591210033|591210243|AC|29|F2203 1\n",
      "MITE_T_37843|chr2D|27495744|27496008|TA|271|F1562 1\n",
      "MITE_T_71622|chr4B|520933546|520933710|GC|35|F2957 1\n",
      "MITE_T_52748|chr5B|384566112|384566340|TA|78|F2056 1\n",
      "MITE_T_36733|chr5D|447380005|447380271|TA|31|F1518 1\n",
      "MITE_T_3028|chr1A|517928905|517929322|TGGCCA|13|F200 1\n",
      "MITE_T_78251|chr5B|618270444|618270598|GC|10|F3349 1\n",
      "MITE_T_125662|chr5A|678567266|678567871|CG|56|F5873 1\n",
      "MITE_T_52664|chr7D|637871758|637871989|TTA|90|F2048 1\n",
      "MITE_T_7485|chr1A|22277999|22278369|AATT|112|F423 1\n",
      "MITE_T_4937|chr2A|180100250|180100642|TTA|68|F295 1\n",
      "MITE_T_2050|chr7B|377815087|377815518|TGTTC|443|F144 1\n",
      "MITE_T_9473|chr3B|638363201|638363549|CG|50|F541 1\n",
      "MITE_T_64274|chr4B|109408199|109408375|CTTATCTC|14|F2579 1\n",
      "MITE_T_50337|chr5A|513715135|513715373|TAAA|18|F1967 1\n",
      "MITE_T_114001|chr6B|628814452|628814539|TA|92|F5185 1\n",
      "MITE_T_124448|chr5B|489098456|489099103|TCGA|26|F5834 1\n",
      "MITE_T_19108|chr2B|800251804|800252118|AT|41|F802 1\n",
      "MITE_T_71733|chr7A|701493467|701493631|ATAGTAAA|167|F2966 1\n",
      "MITE_T_49361|chr2B|797881454|797881694|AT|75|F1927 1\n"
     ]
    },
    {
     "name": "stdout",
     "output_type": "stream",
     "text": [
      "MITE_T_65241|chr5D|390263446|390263619|TCTCAT|13|F2633 1\n",
      "MITE_T_127728|chr6B|13948394|13948920|ATAT|16|F5973 1\n",
      "MITE_T_27509|chr5D|502540092|502540841|TA|11|F1095 1\n",
      "MITE_T_5214|chr7B|583925610|583925998|AATTTTCTA|105|F319 1\n",
      "MITE_T_2477|chr2A|536694501|536694926|CCAAGACA|432|F162 1\n",
      "MITE_T_120653|chr5B|272785763|272785844|GG|13|F5517 1\n",
      "MITE_T_6555|chr1D|432199133|432199511|CG|395|F380 1\n",
      "MITE_T_105746|chr7D|611229604|611229700|TA|25|F4744 1\n",
      "MITE_T_52358|chr1B|1443600|1443832|TA|24|F2038 1\n",
      "MITE_T_7436|chr3D|468435872|468436243|CG|30|F420 1\n",
      "MITE_T_8872|chr6A|615044482|615044841|GC|21|F498 1\n",
      "MITE_T_126845|chr6B|624466321|624466886|CTAAATAG|585|F5920 1\n",
      "MITE_T_41663|chr3D|306015846|306016100|CT|257|F1769 1\n",
      "MITE_T_13581|chr7B|683227941|683228273|TA|29|F646 1\n",
      "MITE_T_124355|chr7A|353203305|353203956|TA|17|F5830 1\n",
      "MITE_T_5648|chr1A|550699735|550700119|CT|65|F340 1\n",
      "MITE_T_49465|chr1B|625394603|625394842|AT|243|F1934 1\n",
      "MITE_T_855|chr6D|2290746|2291197|TTA|15|F81 1\n",
      "MITE_T_20122|chr2D|647763047|647763358|TA|19|F833 1\n",
      "MITE_T_9176|chr2D|8788570|8788923|TA|46|F520 1\n",
      "MITE_T_3163|chr6B|29328297|29328712|GC|148|F208 1\n",
      "MITE_T_81935|chr7A|247648764|247648899|TTA|13|F3542 1\n",
      "MITE_T_14848|chr1A|583870747|583871501|TT|29|F678 1\n",
      "MITE_T_2491|chr7A|67615661|67616086|GTCATC|431|F164 1\n",
      "MITE_T_30609|chr6D|49450499|49450778|AT|14|F1222 1\n",
      "MITE_T_17766|chr7D|197344133|197344455|TGA|21|F730 1\n",
      "MITE_T_18028|chr7B|86054493|86054814|TTA|26|F744 1\n",
      "MITE_T_126669|chr7D|494885868|494886439|TT|11|F5912 1\n",
      "MITE_T_127122|chr7D|569702945|569703499|GC|567|F5937 1\n",
      "MITE_T_52975|chr6B|653223567|653223794|GCA|20|F2064 1\n",
      "MITE_T_5724|chr4B|667882826|667883210|GC|24|F346 1\n",
      "MITE_T_124607|chr2A|342842584|342843215|CTTATTAG|22|F5845 1\n",
      "MITE_T_80488|chr1A|129743654|129744379|GCGC|11|F3433 1\n",
      "MITE_T_8959|chr5B|591819966|591820324|GC|374|F505 1\n",
      "MITE_T_2736|chr7D|135974843|135975264|AC|19|F182 1\n",
      "MITE_T_11178|chr3D|176585137|176585477|TA|14|F588 1\n",
      "MITE_T_105227|chr2D|22421368|22421465|AT|102|F4710 1\n",
      "MITE_T_80190|chr2D|97873081|97873230|AT|157|F3409 1\n",
      "MITE_T_123681|chr3B|750294481|750295159|CTCACCAC|12|F5801 1\n",
      "MITE_T_4611|chr6D|42536373|42536770|GCA|11|F278 1\n",
      "MITE_T_126306|chr2D|605631931|605632514|CAATCA|20|F5896 1\n",
      "MITE_T_699|chr5B|672623839|672624297|AT|176|F60 1\n",
      "MITE_T_127837|chr5B|467506434|467507234|TTA|21|F5987 1\n",
      "MITE_T_65279|chr5D|524327418|524327591|AT|16|F2638 1\n",
      "MITE_T_55230|chr2A|51670649|51670863|TA|34|F2186 1\n",
      "MITE_T_59731|chr7A|38030520|38030713|AT|29|F2326 1\n",
      "MITE_T_111388|chr4A|506167070|506167159|TA|93|F5080 1\n",
      "MITE_T_123733|chr5D|119887444|119888120|ACCGCTAC|18|F5805 1\n",
      "MITE_T_128335|chr7A|722412607|722413100|GCTGGGAG|24|F6010 1\n",
      "MITE_T_10712|chr5D|537686423|537686769|TA|31|F556 1\n",
      "MITE_T_3424|chr5A|442503159|442503569|TGC|27|F226 1\n",
      "MITE_T_74213|chr6D|305742923|305743085|TA|43|F3037 1\n",
      "MITE_T_65843|chr5B|696583120|696583292|AT|13|F2665 1\n",
      "MITE_T_81773|chr3B|237321438|237322230|TTA|15|F3527 1\n",
      "MITE_T_45187|chr4D|435664205|435664448|TA|94|F1877 1\n",
      "MITE_T_127042|chr5D|498401194|498401753|CT|16|F5929 1\n",
      "MITE_T_103050|chr3B|606573380|606574095|TA|28|F4586 1\n",
      "MITE_T_1858|chr7A|725300865|725301299|TTTCACCCC|148|F133 1\n",
      "MITE_T_29037|chr7A|515173277|515173560|CG|46|F1173 1\n",
      "MITE_T_60153|chr6D|448029458|448029648|TTA|22|F2361 1\n",
      "MITE_T_65126|chr3B|193885464|193885637|TA|49|F2629 1\n",
      "MITE_T_1759|chr2D|637973597|637974032|AT|42|F126 1\n",
      "MITE_T_84|chr7A|202735997|202736479|CTGACGGC|29|F13 1\n",
      "MITE_T_308|chr3D|11146552|11147024|GT|27|F32 1\n",
      "MITE_T_48|chr5A|582917205|582917689|CT|136|F7 1\n",
      "MITE_T_70449|chr7D|605785792|605785958|GC|40|F2879 1\n",
      "MITE_T_99085|chr1B|467547171|467547282|TA|32|F4309 1\n",
      "MITE_T_3326|chr6B|672998427|672998841|CCGTGGTC|421|F217 1\n",
      "MITE_T_60065|chr5A|567287245|567287436|GC|17|F2352 1\n",
      "MITE_T_124514|chr5B|323634753|323635394|TA|20|F5840 1\n",
      "MITE_T_67420|chr5A|676808323|676808493|AT|15|F2720 1\n",
      "MITE_T_20931|chr7A|602458357|602458666|AA|105|F857 1\n",
      "MITE_T_105756|chr2B|776812892|776812988|AT|103|F4746 1\n",
      "MITE_T_6573|chr6D|320716167|320716545|TTG|36|F382 1\n",
      "MITE_T_50763|chr1D|298552043|298552280|TT|38|F1986 1\n",
      "MITE_T_71636|chr7B|534539642|534539806|GC|23|F2959 1\n",
      "MITE_T_84202|chr1D|443547924|443548054|TA|16|F3619 1\n",
      "MITE_T_18001|chr7D|48495474|48495795|TAA|26|F742 1\n",
      "MITE_T_81048|chr3D|91034560|91034700|AT|16|F3479 1\n",
      "MITE_T_66274|chr1B|675965500|675965671|TAA|29|F2683 1\n",
      "MITE_T_62423|chr4A|583713305|583713487|TA|32|F2483 1\n",
      "MITE_T_10810|chr2A|97836201|97836545|TAA|42|F566 1\n",
      "MITE_T_3358|chr5B|121913548|121914311|GAA|15|F221 1\n",
      "MITE_T_53374|chr1D|478358247|478358469|AT|82|F2096 1\n",
      "MITE_T_127744|chr2B|1667596|1668122|CCGG|220|F5975 1\n",
      "MITE_T_5772|chr6B|43087742|43088125|CA|151|F350 1\n",
      "MITE_T_828|chr1A|56613863|56614316|AT|20|F78 1\n",
      "MITE_T_80509|chr1B|22647756|22648481|AT|14|F3436 1\n",
      "MITE_T_60554|chr6B|623771441|623772175|AT|192|F2370 1\n",
      "MITE_T_18360|chr2D|483049307|483049626|AT|39|F757 1\n",
      "MITE_T_5351|chr6D|317592482|317592869|TTAC|18|F323 1\n",
      "MITE_T_11784|chr7B|313238352|313238690|CTAG|19|F596 1\n",
      "MITE_T_126635|chr2B|717773150|717773724|TCCGCCACC|50|F5910 1\n",
      "MITE_T_26117|chr5B|512332432|512332725|TGC|38|F1048 1\n",
      "MITE_T_126077|chr3A|225655018|225655609|AT|257|F5887 1\n",
      "MITE_T_73679|chr1B|57767818|57767980|GC|19|F3022 1\n",
      "MITE_T_122269|chr7B|217359153|217359858|GC|12|F5692 1\n",
      "MITE_T_5797|chr6D|144066049|144066431|TG|148|F352 1\n",
      "MITE_T_13477|chr5D|437873553|437873886|TTA|20|F636 1\n",
      "MITE_T_8223|chr7D|69154498|69154863|TT|381|F466 1\n",
      "MITE_T_63365|chr6B|148823901|148824080|AT|40|F2535 1\n",
      "MITE_T_20923|chr5A|549424679|549424988|TT|27|F856 1\n",
      "MITE_T_11005|chr5A|436244002|436244344|TA|32|F577 1\n",
      "MITE_T_21638|chr2A|688640832|688641139|GAT|55|F880 1\n",
      "MITE_T_4606|chr5B|33751181|33751578|CTTAG|20|F277 1\n",
      "MITE_T_6770|chr2B|789132388|789132765|TT|385|F389 1\n",
      "MITE_T_6577|chr7B|637223113|637223491|GC|172|F383 1\n",
      "MITE_T_8538|chr2A|24210086|24210448|GC|137|F477 1\n",
      "MITE_T_10842|chr5D|556723787|556724131|TA|41|F569 1\n",
      "MITE_T_127602|chr7B|130660589|130661126|GC|26|F5964 1\n",
      "MITE_T_42752|chr2D|327619996|327620244|TA|24|F1812 1\n",
      "MITE_T_5208|chr2A|499563454|499563842|CTCATCGGC|404|F318 1\n",
      "MITE_T_113210|chr2A|379151716|379151803|AT|92|F5147 1\n",
      "MITE_T_7432|chr2B|379283396|379284155|AATT|147|F419 1\n",
      "MITE_T_123209|chr5D|424652265|424652959|AA|16|F5774 1\n",
      "MITE_T_74244|chr2A|84945506|84945668|TA|13|F3040 1\n",
      "MITE_T_2646|chr6D|347683187|347683610|ATGATCAT|451|F175 1\n",
      "MITE_T_4693|chr7B|317254089|317254485|GC|38|F282 1\n",
      "MITE_T_5079|chr1A|517636838|517637228|AT|29|F309 1\n",
      "MITE_T_127963|chr1B|148111992|148112500|GCACACAG|22|F5995 1\n",
      "MITE_T_63076|chr7D|504254134|504254314|GC|33|F2526 1\n",
      "MITE_T_18495|chr2A|31071983|31072301|TTA|27|F771 1\n",
      "MITE_T_122838|chr6A|150230563|150231261|CTACAA|24|F5763 1\n",
      "MITE_T_108882|chr2B|779955883|779955976|TA|98|F4939 1\n",
      "MITE_T_13863|chr6A|599800978|599801309|TT|23|F658 1\n",
      "MITE_T_55182|chr5B|556139065|556139280|TT|49|F2180 1\n",
      "MITE_T_65501|chr5D|178656087|178656259|GA|42|F2648 1\n",
      "MITE_T_80734|chr6B|346625035|346625177|AT|24|F3460 1\n",
      "MITE_T_58092|chr3D|550204586|550204791|ATTGTAAA|16|F2225 1\n",
      "MITE_T_18508|chr2A|170599458|170599776|CA|325|F772 1\n",
      "MITE_T_5697|chr5D|35145604|35145988|GC|46|F344 1\n",
      "MITE_T_42794|chr4A|658436099|658436347|AT|32|F1818 1\n",
      "MITE_T_124510|chr7B|28493161|28493803|TA|16|F5839 1\n",
      "MITE_T_727|chr3B|820077619|820078076|TTA|20|F63 1\n",
      "MITE_T_66487|chr3B|30508061|30508231|AA|26|F2706 1\n",
      "MITE_T_64338|chr6D|419592588|419592764|TA|20|F2586 1\n",
      "MITE_T_25672|chr3B|534189331|534189626|CACAGGAAC|61|F1023 1\n",
      "MITE_T_126828|chr7A|580227042|580227608|TA|585|F5918 1\n",
      "MITE_T_36761|chr1D|373420539|373420804|TA|278|F1522 1\n",
      "MITE_T_43773|chr3B|102978303|102978547|AT|82|F1863 1\n",
      "MITE_T_5005|chr6B|346626171|346626562|TG|89|F302 1\n",
      "MITE_T_124504|chr1D|9665142|9665785|ATGATACG|17|F5838 1\n",
      "MITE_T_29779|chr1B|542428301|542428582|TA|55|F1190 1\n",
      "MITE_T_126028|chr1A|456446202|456446794|TTA|21|F5884 1\n",
      "MITE_T_21|chr5B|643163093|643163578|TTA|35|F4 1\n",
      "MITE_T_45588|chr5A|410934900|410935142|ACT|30|F1888 1\n",
      "MITE_T_6813|chr5B|102633943|102634703|CAT|152|F392 1\n",
      "MITE_T_5193|chr7B|658318940|658319329|TTT|62|F315 1\n",
      "MITE_T_125122|chr2D|292024185|292024808|GTAGCTGG|12|F5850 1\n",
      "MITE_T_4587|chr2B|47619786|47620184|TA|30|F274 1\n",
      "MITE_T_64278|chr1D|232431889|232432065|TA|15|F2580 1\n",
      "MITE_T_124346|chr1A|516382099|516382750|GTGCGA|10|F5828 1\n",
      "MITE_T_126298|chr4A|535829940|535830720|TA|42|F5895 1\n",
      "MITE_T_8955|chr2B|92605371|92605729|CTAAG|20|F504 1\n",
      "MITE_T_2600|chr1D|28485196|28485620|GGCC|16|F169 1\n",
      "MITE_T_68615|chr1A|575386995|575387163|GC|25|F2773 1\n",
      "MITE_T_105605|chr6D|429498197|429498293|TA|105|F4734 1\n",
      "MITE_T_9340|chr2B|334898699|334899456|GATATGAA|13|F530 1\n",
      "MITE_T_124530|chr7A|471782031|471782672|AT|37|F5841 1\n",
      "MITE_T_70371|chr3D|30359860|30360026|GC|42|F2875 1\n",
      "MITE_T_126649|chr2B|647532291|647532864|TTTAGG|14|F5911 1\n",
      "MITE_T_69003|chr1A|533280076|533280243|GT|24|F2793 1\n",
      "MITE_T_5019|chr4B|104312239|104312630|AA|67|F304 1\n",
      "MITE_T_50962|chr2D|515539846|515540082|AT|31|F2003 1\n",
      "MITE_T_56511|chr7D|638681356|638681564|TA|218|F2212 1\n",
      "MITE_T_3865|chr5B|697455302|697455708|TA|16|F243 1\n",
      "MITE_T_57877|chr3A|669625055|669625261|CG|92|F2219 1\n",
      "MITE_T_18367|chr4B|637590406|637590725|TA|32|F758 1\n",
      "MITE_T_123944|chr1A|99486198|99486859|AT|18|F5816 1\n",
      "MITE_T_122782|chr2D|127782125|127782826|TC|40|F5753 1\n",
      "MITE_T_8838|chr2B|505013345|505013705|TA|39|F494 1\n",
      "MITE_T_686|chr3B|583633793|583634252|TG|69|F58 1\n"
     ]
    },
    {
     "name": "stdout",
     "output_type": "stream",
     "text": [
      "MITE_T_124601|chr6D|362864877|362865510|ATTATGCA|24|F5844 1\n",
      "MITE_T_51597|chr7D|608192503|608192738|GAA|15|F2023 1\n",
      "MITE_T_76846|chr3D|140625248|140625407|TA|49|F3243 1\n",
      "MITE_T_3398|chr2A|760764844|760765255|ACCGGGAGA|82|F224 1\n",
      "MITE_T_10995|chr1B|41474998|41475341|TG|18|F575 1\n",
      "MITE_T_1008|chr5A|534624819|534625266|ATTCCCTCTC|454|F90 1\n",
      "MITE_T_844|chr1D|459832775|459833226|AT|21|F80 1\n",
      "MITE_T_29616|chr6A|499802205|499802487|ATAT|11|F1183 1\n",
      "MITE_T_3440|chr6A|604136|604545|TCA|15|F228 1\n",
      "MITE_T_3330|chr3A|16659470|16659884|TA|18|F218 1\n",
      "MITE_T_821|chr7D|637396533|637397301|TTA|20|F77 1\n",
      "MITE_T_65639|chr6A|607842521|607842693|TT|21|F2660 1\n",
      "MITE_T_49797|chr6B|40435428|40435667|CTG|18|F1948 1\n",
      "MITE_T_8554|chr7A|66423855|66424217|AA|41|F479 1\n",
      "MITE_T_91009|chr1B|452797137|452797260|TA|15|F3940 1\n"
     ]
    }
   ],
   "source": [
    "#search trep \n",
    "count = 1\n",
    "results = []\n",
    "for k in s.index.tolist():\n",
    "#    df_blat[df_blat.qName == k].sort_values(by=['tName','tStart']).to_csv(str(count) + '.csv')\n",
    "    count += 1\n",
    "    trep = df_trep[df_trep.qseqid == k].reset_index(drop=True)\n",
    "    trep_res = \"\"\n",
    "    if len(trep.index) > 0:\n",
    "        trep_res = trep.iloc[0].sseqid\n",
    "        results.append((s[k],trep_res.split('_')[2]))\n",
    "    else:\n",
    "        results.append((s[k],'other'))\n",
    "        print(k,s[k])"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 9,
   "metadata": {},
   "outputs": [],
   "source": [
    "#sumarize results\n",
    "sum_results = {}\n",
    "for r in results:\n",
    "    count, mite = r\n",
    "    if mite in sum_results:\n",
    "        sum_results[mite] += count\n",
    "    else:\n",
    "        sum_results[mite] = count\n"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 10,
   "metadata": {},
   "outputs": [
    {
     "name": "stdout",
     "output_type": "stream",
     "text": [
      "Tina 2.395897361194585e-05 2\n",
      "Apollo 2.395897361194585e-05 2\n",
      "Marius 8.385640764181048e-05 7\n",
      "BdisStowawayL 8.385640764181048e-05 7\n",
      "BdisStowawayN 8.385640764181048e-05 7\n",
      "Argo 9.58358944477834e-05 8\n",
      "Alexandra 0.00010781538125375632 9\n",
      "BdisStowawayG 0.00010781538125375632 9\n",
      "BdisStowawayS 0.00013177435486570217 11\n",
      "Tantalos 0.00014375384167167508 12\n",
      "BdisStowawayC 0.0002036512757015397 17\n",
      "BdisEko 0.00022761024931348557 19\n",
      "Tempest 0.0002515692229254314 21\n",
      "Jura 0.000467199985432944 39\n",
      "Ophelia 0.00047917947223891696 40\n",
      "Nisos 0.0006109538271046192 51\n",
      "TD 0.0006708512611344838 56\n",
      "BdisStowawayA 0.0006828307479404567 57\n",
      "Talma 0.0012578461146271571 105\n",
      "Byron 0.0015453537979705071 129\n",
      "BdisStowawayQ 0.001868799941731776 156\n",
      "Nicole 0.0024438153084184767 204\n",
      "Vacuna 0.0030907075959410142 258\n",
      "Jason 0.0034021742528963107 284\n",
      "Pluto 0.003641763989015769 304\n",
      "AA 0.003737599883463552 312\n",
      "Zong 0.003737599883463552 312\n",
      "Preml 0.0038813537251352276 324\n",
      "Lara 0.005223056247404195 436\n",
      "Rhea 0.005666297259225193 473\n",
      "unnamed 0.006325169033553704 528\n",
      "Remus 0.006852266453016512 572\n",
      "Watson 0.007031958755106107 587\n",
      "Minimus 0.008241886922509371 688\n",
      "SM 0.009188266380181232 767\n",
      "SAB 0.00929608176143499 776\n",
      "BdisStowawayD 0.009990891996181419 834\n",
      "BdisStowawayP 0.010230481732300878 854\n",
      "Phoebus 0.010973209914271198 916\n",
      "Abana 0.01105706632191301 923\n",
      "BdisStowawayF 0.011380512465674278 950\n",
      "Boris 0.011979486805972925 1000\n",
      "Spring 0.012746173961555191 1064\n",
      "BdisStowawayR 0.012949825237256731 1081\n",
      "Argus 0.013836307260898727 1155\n",
      "BdisTouristS 0.013920163668540538 1162\n",
      "Iantha 0.014435281601197374 1205\n",
      "Xenon 0.015741045663048424 1314\n",
      "BdisStowawayE 0.016363978976959015 1366\n",
      "Cassandra 0.0172983789478249 1444\n",
      "Fortuna 0.01802912764298925 1505\n",
      "WHAM 0.019394789138870164 1619\n",
      "Veju 0.02244955827439326 1874\n",
      "BdisEgi 0.028451281164185695 2375\n",
      "Victor 0.030990932367051954 2587\n",
      "BdisStowawayK 0.0315899067073506 2637\n",
      "BdisStowawayI 0.03200918874555966 2672\n",
      "Islay 0.03220086053445522 2688\n",
      "BdisTouristL 0.03271597846711206 2731\n",
      "Oleus 0.0343332091859184 2866\n",
      "BdisStowawayH 0.0347764501977394 2903\n",
      "Acton 0.03674108603391896 3067\n",
      "Stolos 0.06495277746198519 5422\n",
      "Misenos 0.07589004891583848 6335\n",
      "Gerald 0.07639318736168933 6377\n",
      "Thorne 0.08952270490103566 7473\n",
      "X1 0.09287696120670808 7753\n",
      "XI 0.14426895960433192 12043\n",
      "Antonio 0.15041443633579604 12556\n",
      "BdisF 0.15314575932755786 12784\n",
      "Iapetus 0.1711868664573531 14290\n",
      "Aison 0.17397808688314478 14523\n",
      "BdisStowawayT 0.21642140863670684 18066\n",
      "Orpheus 0.23611568494572632 19710\n",
      "Nusif 0.23695424902214443 19780\n",
      "Coeus 0.24610657694190777 20544\n",
      "Eos 0.27539642218251154 22989\n",
      "Polyphemus 0.2814340835327219 23493\n",
      "Tiny 0.30946608265869857 25833\n",
      "Acotas 0.4260983662016509 35569\n",
      "BdisStowawayJ 0.5616462594112346 46884\n",
      "Acer 0.6389379082833719 53336\n",
      "Marimom 0.7472564279829791 62378\n",
      "Angela 0.7736232784429254 64579\n",
      "Fergat 0.7879267856892571 65773\n",
      "Xusuf 1.248550032865722 104224\n",
      "Hades 5.275562338074774 440383\n",
      "other 5.501842864352797 459272\n",
      "Pan 5.741971677378524 479317\n",
      "Athos 7.352901186124927 613791\n",
      "SHVA 8.475546812659873 707505\n",
      "Jorge 8.63280153596188 720632\n",
      "Icarus 17.220236755389543 1437477\n",
      "Thalos 32.99307597642102 2754131\n"
     ]
    }
   ],
   "source": [
    "#order and print\n",
    "import operator\n",
    "suma = 0\n",
    "for mite,count in sum_results.items():\n",
    "    suma += count\n",
    "sorted_x = sorted(sum_results.items(), key=operator.itemgetter(1))\n",
    "for r in sorted_x:\n",
    "    mite, count = r\n",
    "    print(mite, (count * 100 / suma),count )"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": null,
   "metadata": {},
   "outputs": [],
   "source": []
  },
  {
   "cell_type": "code",
   "execution_count": 11,
   "metadata": {},
   "outputs": [
    {
     "name": "stdout",
     "output_type": "stream",
     "text": [
      "Total genes 110789\n",
      "Genes with MITEs 7767\n",
      "That\"s 7.010623798391537\n"
     ]
    }
   ],
   "source": [
    "#count genes with MITEs in full genome\n",
    "import pandas as pd\n",
    "\n",
    "genome_file = 'extras/data/iwgsc.gff3'\n",
    "df_genome = pd.read_csv(genome_file, index_col=False, sep='\\t', header=None)\n",
    "df_genome.columns = ['seqname', 'source', 'feature', 'start', 'end', 'score', 'strand', 'frame', 'attribute']\n",
    "\n",
    "\n",
    "df_blat = pd.read_csv('extras/data/iwgsc_cn4/blast_95.csv', index_col=False, sep='\\t')\n",
    "df_blat.columns = ['qseqid','sseqid','pident','length','mismatch','gapopen','qstart','qend','sstart','send','evalue','bitscore']\n",
    "\n",
    "df_genes = pd.read_csv('../data/iwgsc_refseqv1.0_HighConf_2017Mar13.gff3', index_col=False, sep='\\t')\n",
    "df_genes.columns = ['seqname', 'source', 'feature', 'start', 'end', 'score', 'strand', 'frame', 'attribute']\n",
    "df_genes = df_genes[df_genes.feature == 'gene'].reset_index(drop=True)\n",
    "\n",
    "blat_genome = {}\n",
    "for k,chromosome in df_genome.iterrows():\n",
    "    blat_genome[chromosome.seqname] = df_blat[(df_blat.sseqid == chromosome.seqname)]\n",
    "blat_genome[chromosome.seqname] = df_blat[(df_blat.sseqid == chromosome.seqname)]\n",
    "\n",
    "gene_with_mites_count = 0\n",
    "gene_count = len(df_genes.index)\n",
    "gene_names = []\n",
    "for k2,gene in df_genes.iterrows():\n",
    "    curr_df = blat_genome[gene.seqname]\n",
    "    res_1 = curr_df[(curr_df.sstart >= gene.start) & (curr_df.sstart <= gene.end)]\n",
    "    res_2 = curr_df[(curr_df.send >= gene.start) & (curr_df.send <= gene.end)]\n",
    "    if len(res_1.index) > 0 or len(res_2.index) > 0:\n",
    "        gene_names.append(gene.attribute)\n",
    "        gene_with_mites_count += 1\n",
    "\n",
    "gene_names = set(gene_names)\n",
    "thefile = open('extras/genes_with_mites.txt', 'w')\n",
    "for item in gene_names:\n",
    "    thefile.write(\"%s\\n\" % item)\n",
    "\n",
    "print('Total genes', gene_count)\n",
    "print('Genes with MITEs', gene_with_mites_count)\n",
    "print('That\"s',  gene_with_mites_count * 100 / gene_count)"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": null,
   "metadata": {},
   "outputs": [],
   "source": []
  },
  {
   "cell_type": "code",
   "execution_count": null,
   "metadata": {},
   "outputs": [],
   "source": []
  },
  {
   "cell_type": "code",
   "execution_count": 23,
   "metadata": {},
   "outputs": [
    {
     "data": {
      "text/html": [
       "<div>\n",
       "<style scoped>\n",
       "    .dataframe tbody tr th:only-of-type {\n",
       "        vertical-align: middle;\n",
       "    }\n",
       "\n",
       "    .dataframe tbody tr th {\n",
       "        vertical-align: top;\n",
       "    }\n",
       "\n",
       "    .dataframe thead th {\n",
       "        text-align: right;\n",
       "    }\n",
       "</style>\n",
       "<table border=\"1\" class=\"dataframe\">\n",
       "  <thead>\n",
       "    <tr style=\"text-align: right;\">\n",
       "      <th></th>\n",
       "      <th>qseqid</th>\n",
       "      <th>sseqid</th>\n",
       "      <th>pident</th>\n",
       "      <th>length</th>\n",
       "      <th>mismatch</th>\n",
       "      <th>gapopen</th>\n",
       "      <th>qstart</th>\n",
       "      <th>qend</th>\n",
       "      <th>sstart</th>\n",
       "      <th>send</th>\n",
       "      <th>evalue</th>\n",
       "      <th>bitscore</th>\n",
       "    </tr>\n",
       "  </thead>\n",
       "  <tbody>\n",
       "    <tr>\n",
       "      <th>0</th>\n",
       "      <td>MITE_T_100|chr4B|149720156|149720951|AT|279|F15</td>\n",
       "      <td>chr1A</td>\n",
       "      <td>98.36</td>\n",
       "      <td>795</td>\n",
       "      <td>13</td>\n",
       "      <td>0</td>\n",
       "      <td>1</td>\n",
       "      <td>795</td>\n",
       "      <td>562130598</td>\n",
       "      <td>562129804</td>\n",
       "      <td>0.0</td>\n",
       "      <td>1375.0</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>1</th>\n",
       "      <td>MITE_T_316|chr1A|335048447|335048919|CT|15|F33</td>\n",
       "      <td>chr1A</td>\n",
       "      <td>100.00</td>\n",
       "      <td>472</td>\n",
       "      <td>0</td>\n",
       "      <td>0</td>\n",
       "      <td>1</td>\n",
       "      <td>472</td>\n",
       "      <td>335048448</td>\n",
       "      <td>335048919</td>\n",
       "      <td>0.0</td>\n",
       "      <td>852.0</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>2</th>\n",
       "      <td>MITE_T_332|chr1A|557861785|557862256|TAA|21|F35</td>\n",
       "      <td>chr1A</td>\n",
       "      <td>100.00</td>\n",
       "      <td>471</td>\n",
       "      <td>0</td>\n",
       "      <td>0</td>\n",
       "      <td>1</td>\n",
       "      <td>471</td>\n",
       "      <td>557861786</td>\n",
       "      <td>557862256</td>\n",
       "      <td>0.0</td>\n",
       "      <td>850.0</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>3</th>\n",
       "      <td>MITE_T_417|chr3A|333269323|333269791|TAGCCCAAG...</td>\n",
       "      <td>chr1A</td>\n",
       "      <td>96.58</td>\n",
       "      <td>468</td>\n",
       "      <td>6</td>\n",
       "      <td>2</td>\n",
       "      <td>1</td>\n",
       "      <td>468</td>\n",
       "      <td>259994055</td>\n",
       "      <td>259993598</td>\n",
       "      <td>0.0</td>\n",
       "      <td>773.0</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>4</th>\n",
       "      <td>MITE_T_547|chr7A|173865867|173866329|TATATATAT...</td>\n",
       "      <td>chr1A</td>\n",
       "      <td>95.89</td>\n",
       "      <td>438</td>\n",
       "      <td>17</td>\n",
       "      <td>1</td>\n",
       "      <td>26</td>\n",
       "      <td>462</td>\n",
       "      <td>100100967</td>\n",
       "      <td>100101404</td>\n",
       "      <td>0.0</td>\n",
       "      <td>706.0</td>\n",
       "    </tr>\n",
       "  </tbody>\n",
       "</table>\n",
       "</div>"
      ],
      "text/plain": [
       "                                              qseqid sseqid  pident  length  \\\n",
       "0    MITE_T_100|chr4B|149720156|149720951|AT|279|F15  chr1A   98.36     795   \n",
       "1     MITE_T_316|chr1A|335048447|335048919|CT|15|F33  chr1A  100.00     472   \n",
       "2    MITE_T_332|chr1A|557861785|557862256|TAA|21|F35  chr1A  100.00     471   \n",
       "3  MITE_T_417|chr3A|333269323|333269791|TAGCCCAAG...  chr1A   96.58     468   \n",
       "4  MITE_T_547|chr7A|173865867|173866329|TATATATAT...  chr1A   95.89     438   \n",
       "\n",
       "   mismatch  gapopen  qstart  qend     sstart       send  evalue  bitscore  \n",
       "0        13        0       1   795  562130598  562129804     0.0    1375.0  \n",
       "1         0        0       1   472  335048448  335048919     0.0     852.0  \n",
       "2         0        0       1   471  557861786  557862256     0.0     850.0  \n",
       "3         6        2       1   468  259994055  259993598     0.0     773.0  \n",
       "4        17        1      26   462  100100967  100101404     0.0     706.0  "
      ]
     },
     "execution_count": 23,
     "metadata": {},
     "output_type": "execute_result"
    }
   ],
   "source": [
    "df_blat.head()"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": null,
   "metadata": {},
   "outputs": [],
   "source": [
    "#count genes with MITEs per chromosome\n",
    "import pandas as pd\n",
    "\n",
    "df_blat = pd.read_csv('data/iwgsc_cn4/blat_95_95.csv', index_col=False, sep='\\t')\n",
    "\n",
    "df_genes = pd.read_csv('../../data/iwgsc_refseqv1.0_HighConf_2017Mar13.gff3', index_col=False, sep='\\t')\n",
    "df_genes.columns = ['seqname', 'source', 'feature', 'start', 'end', 'score', 'strand', 'frame', 'attribute']\n",
    "df_genes = df_genes[df_genes.feature == 'gene'].reset_index(drop=True)\n",
    "\n",
    "df_genome = pd.read_csv('data/iwgsc.gff3', index_col=False, sep='\\t', header=None)\n",
    "df_genome.columns = ['seqname', 'source', 'feature', 'start', 'end', 'score', 'strand', 'frame', 'attribute']\n",
    "\n",
    "blat_genome = {}\n",
    "for k1,genome in df_genome.iterrows():\n",
    "    curr_blat = df_blat[(df_blat.tName == genome.seqname)] \n",
    "    curr_genes = df_genes[(df_genes.seqname == genome.seqname)]\n",
    "    gene_with_mites_count = 0\n",
    "    gene_count = len(curr_genes.index)\n",
    "    print(gene_count)\n",
    "    for k2,gene in curr_genes.iterrows():\n",
    "        res_1 = curr_blat[(curr_blat.tStart >= gene.start) & (curr_blat.tStart <= gene.end)]\n",
    "        res_2 = curr_blat[(curr_blat.tEnd >= gene.start) & (curr_blat.tEnd <= gene.end)]\n",
    "        if len(res_1.index) > 0 or len(res_2.index) > 0:\n",
    "            gene_with_mites_count += 1\n",
    "    print(genome.seqname,gene_with_mites_count)\n",
    "    print(genome.seqname,gene_with_mites_count * 100 / gene_count)"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": null,
   "metadata": {},
   "outputs": [],
   "source": [
    "#count genes with MITEs per genome\n",
    "import pandas as pd\n",
    "\n",
    "df_blat = pd.read_csv('data/iwgsc_cn4/blat_95_95.csv', index_col=False, sep='\\t')\n",
    "\n",
    "df_genes = pd.read_csv('../../data/iwgsc_refseqv1.0_HighConf_2017Mar13.gff3', index_col=False, sep='\\t')\n",
    "df_genes.columns = ['seqname', 'source', 'feature', 'start', 'end', 'score', 'strand', 'frame', 'attribute']\n",
    "df_genes = df_genes[df_genes.feature == 'gene'].reset_index(drop=True)\n",
    "\n",
    "df_genome = pd.read_csv('data/iwgsc.gff3', index_col=False, sep='\\t', header=None)\n",
    "df_genome.columns = ['seqname', 'source', 'feature', 'start', 'end', 'score', 'strand', 'frame', 'attribute']\n",
    "print('starting...')\n",
    "blat_genome = {}\n",
    "for k,chromosome in df_genome.iterrows():\n",
    "    blat_genome[chromosome.seqname] = df_blat[(df_blat.tName == chromosome.seqname)]\n",
    "print('proccessing genomes...')\n",
    "for genome in ['A','B','D']:\n",
    "    curr_genes = df_genes[(df_genes.seqname.str.contains(genome))]\n",
    "    gene_with_mites_count = 0\n",
    "    gene_count = len(curr_genes.index)\n",
    "    print(gene_count)\n",
    "    for k2,gene in curr_genes.iterrows():\n",
    "        curr_df = blat_genome[gene.seqname]\n",
    "        res_1 = curr_df[(curr_df.tStart >= gene.start) & (curr_df.tStart <= gene.end)]\n",
    "        res_2 = curr_df[(curr_df.tEnd >= gene.start) &  (curr_df.tEnd <= gene.end)]\n",
    "        if len(res_1.index) > 0 or len(res_2.index) > 0:\n",
    "            if k2 % 1000 == 0:\n",
    "                print(k2,gene_with_mites_count)\n",
    "            gene_with_mites_count += 1\n",
    "    print(genome,gene_with_mites_count)\n",
    "    print(genome,gene_with_mites_count * 100 / gene_count)"
   ]
  },
  {
   "cell_type": "markdown",
   "metadata": {},
   "source": [
    "percentage of genome covered by MITEs\n"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": null,
   "metadata": {},
   "outputs": [],
   "source": [
    "import pandas as pd\n",
    "\n",
    "def merge_overlap(intervals):\n",
    "    sorted_by_lower_bound = sorted(intervals, key=lambda tup: tup[0])\n",
    "    merged = []\n",
    "    for higher in sorted_by_lower_bound:\n",
    "        if not merged:\n",
    "            merged.append(higher)\n",
    "        else:\n",
    "            lower = merged[-1]\n",
    "            # test for intersection between lower and higher:\n",
    "            # we know via sorting that lower[0] <= higher[0]\n",
    "            if higher[0] <= lower[1]:\n",
    "                upper_bound = max(lower[1], higher[1])\n",
    "                merged[-1] = (lower[0], upper_bound)  # replace by merged interval\n",
    "            else:\n",
    "                merged.append(higher)\n",
    "    return merged\n",
    "\n",
    "df_blat = pd.read_csv('extras/data/iwgsc_cn4/blast_90_90.order.csv', index_col=False, sep='\\t')\n",
    "\n",
    "df_genome = pd.read_csv('extras/data/iwgsc.gff3', index_col=False, sep='\\t', header=None)\n",
    "df_genome.columns = ['seqname', 'source', 'feature', 'start', 'end', 'score', 'strand', 'frame', 'attribute']\n",
    "intervals = {}\n",
    "for k,v in df_blat.iterrows():\n",
    "    genome = v.sseqid\n",
    "    if not genome in intervals:\n",
    "        intervals[genome] = []\n",
    "    intervals[genome].append((v.sstart,v.send))\n",
    "    \n",
    "print(\"a\")\n",
    "percs_genome = {}\n",
    "total_sum = 0\n",
    "for k,v in df_genome.iterrows():\n",
    "    genome = v.seqname[4:6]\n",
    "    if not genome in percs_genome:\n",
    "        percs_genome[genome] = 0\n",
    "    if not v.seqname in intervals:\n",
    "        continue\n",
    "    current_interval = merge_overlap(intervals[v.seqname])\n",
    "    interval_sum = 0\n",
    "    for i in current_interval:\n",
    "        interval_sum += max(i) - min(i)\n",
    "    perc = interval_sum * 100 / v.end\n",
    "    print(v.seqname, perc)\n",
    "    #calculate avg for full genomes\n",
    "    percs_genome[genome] += perc\n",
    "    total_sum += perc\n",
    "    \n",
    "for genome in ['A','B','D']:\n",
    "    print(genome, percs_genome[genome] / 7)\n",
    "print('Total', total_sum / 21)"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": null,
   "metadata": {},
   "outputs": [],
   "source": [
    "#count genes per genome\n",
    "import pandas as pd\n",
    "df_genes = pd.read_csv('../../data/iwgsc_refseqv1.0_HighConf_2017Mar13.gff3', index_col=False, sep='\\t')\n",
    "df_genes.columns = ['seqname', 'source', 'feature', 'start', 'end', 'score', 'strand', 'frame', 'attribute']\n",
    "df_genes = df_genes[df_genes.feature == 'gene']\n",
    "total_genes = len(df_genes.index)\n",
    "print('total genes', total_genes)\n",
    "s = df_genes.seqname.value_counts()\n",
    "genome = {}\n",
    "for k in s.index.tolist():\n",
    "    gen = k[4:6]\n",
    "    if not gen in genome:\n",
    "        genome[gen] = s[k]\n",
    "    else:\n",
    "        genome[gen] += s[k]\n",
    "print(genome)"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": null,
   "metadata": {},
   "outputs": [],
   "source": [
    "#calculate MITE and gene density\n",
    "import pandas as pd\n",
    "import sys\n",
    "df_blast = pd.read_csv('data/iwgsc_cn4/blat_95_95.csv', index_col=False, sep='\\t')\n",
    "df_genome = pd.read_csv('data/iwgsc.gff3', index_col=False, sep='\\t', header=None)\n",
    "df_genome.columns = ['seqname', 'source', 'feature', 'start', 'end', 'score', 'strand', 'frame', 'attribute']\n",
    "total_bp = 0\n",
    "for k,v in df_genome.iterrows():\n",
    "    total_bp += v.end\n",
    "\n",
    "total_mites = len(df_blast.index)\n",
    "total_mb = total_bp / 1000 / 1000\n",
    "total_mb_total = total_mb\n",
    "total_gb = total_mb / 1000 \n",
    "print ('Total:','&',int(total_mb),'&',total_mites,'&',int(total_mites / total_mb))\n",
    "\n",
    "genome_sizes = {}\n",
    "for k,v in df_genome.iterrows():\n",
    "    df_blast_seq = df_blast[df_blast.tName == v.seqname]\n",
    "    total_mites = len(df_blast_seq.index)\n",
    "    total_mb = v.end / 1000 / 1000\n",
    "    seq = v.seqname.replace('chr','')\n",
    "    if not seq[1:2] in genome_sizes:\n",
    "        genome_sizes[seq[1:2]] = total_mb\n",
    "    else:\n",
    "        genome_sizes[seq[1:2]] += total_mb\n",
    "    print (seq,'&',int(total_mb),'&',total_mites,'&',int(total_mites / total_mb))\n",
    "\n",
    "for genome in ['A','B','D']:\n",
    "    df_blast_seq = df_blast[df_blast.tName.str.contains(genome)]\n",
    "    total_mites = len(df_blast_seq.index)\n",
    "    print (genome,'&', int(genome_sizes[genome]),'&',total_mites,'&',int(total_mites / genome_sizes[genome]))\n",
    "print('*' * 10)\n",
    "    \n",
    "    \n",
    "df_genes = pd.read_csv('../../data/iwgsc_refseqv1.0_HighConf_2017Mar13.gff3', index_col=False, sep='\\t')\n",
    "df_genes.columns = ['seqname', 'source', 'feature', 'start', 'end', 'score', 'strand', 'frame', 'attribute']\n",
    "df_genes = df_genes[df_genes.feature == 'gene']\n",
    "total_genes = len(df_genes.index)\n",
    "print ('Total Genes:',total_genes)\n",
    "print ('Total Genes per MB:',total_genes / total_mb_total)"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": null,
   "metadata": {},
   "outputs": [],
   "source": []
  }
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